Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19190

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19180 and ABZR87_RS19185 overlap by 17 nucleotidesABZR87_RS19185 and ABZR87_RS19190 are separated by 105 nucleotidesABZR87_RS19190 and ABZR87_RS19195 are separated by 82 nucleotidesABZR87_RS19195 and ABZR87_RS19200 are separated by 162 nucleotides ABZR87_RS19180: ABZR87_RS19180 - ATP-binding protein, at 667,107 to 668,651 _RS19180 ABZR87_RS19185: ABZR87_RS19185 - response regulator, at 668,635 to 669,294 _RS19185 ABZR87_RS19190: ABZR87_RS19190 - Spy/CpxP family protein refolding chaperone, at 669,400 to 669,975 _RS19190 ABZR87_RS19195: ABZR87_RS19195 - universal stress protein, at 670,058 to 670,498 _RS19195 ABZR87_RS19200: ABZR87_RS19200 - AraC family transcriptional regulator, at 670,661 to 671,578 _RS19200 Position (kb) 669 670Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 668.687 kb on - strandat 668.687 kb on - strandat 668.687 kb on - strandat 668.705 kb on - strand, within ABZR87_RS19185at 668.731 kb on - strand, within ABZR87_RS19185at 668.731 kb on - strand, within ABZR87_RS19185at 668.920 kb on + strand, within ABZR87_RS19185at 668.921 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.038 kb on - strand, within ABZR87_RS19185at 669.157 kb on + strand, within ABZR87_RS19185at 669.158 kb on - strand, within ABZR87_RS19185at 669.346 kb on - strandat 669.350 kb on + strandat 669.350 kb on + strandat 669.351 kb on + strandat 669.351 kb on - strandat 669.351 kb on - strandat 669.356 kb on + strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.357 kb on - strandat 669.384 kb on + strandat 669.385 kb on - strandat 669.676 kb on + strand, within ABZR87_RS19190at 669.708 kb on + strand, within ABZR87_RS19190at 669.708 kb on + strand, within ABZR87_RS19190at 669.709 kb on - strand, within ABZR87_RS19190at 669.709 kb on - strand, within ABZR87_RS19190at 669.763 kb on + strand, within ABZR87_RS19190at 669.764 kb on - strand, within ABZR87_RS19190at 669.973 kb on + strandat 670.066 kb on - strandat 670.089 kb on + strandat 670.089 kb on + strandat 670.090 kb on - strandat 670.212 kb on + strand, within ABZR87_RS19195at 670.212 kb on + strand, within ABZR87_RS19195at 670.213 kb on - strand, within ABZR87_RS19195at 670.213 kb on - strand, within ABZR87_RS19195at 670.213 kb on - strand, within ABZR87_RS19195at 670.323 kb on + strand, within ABZR87_RS19195at 670.323 kb on + strand, within ABZR87_RS19195at 670.323 kb on + strand, within ABZR87_RS19195at 670.323 kb on + strand, within ABZR87_RS19195at 670.323 kb on + strand, within ABZR87_RS19195at 670.324 kb on - strand, within ABZR87_RS19195at 670.324 kb on - strand, within ABZR87_RS19195at 670.324 kb on - strand, within ABZR87_RS19195at 670.324 kb on - strand, within ABZR87_RS19195at 670.324 kb on - strand, within ABZR87_RS19195at 670.324 kb on - strand, within ABZR87_RS19195at 670.324 kb on - strand, within ABZR87_RS19195at 670.359 kb on + strand, within ABZR87_RS19195at 670.360 kb on - strand, within ABZR87_RS19195at 670.360 kb on - strand, within ABZR87_RS19195at 670.393 kb on - strand, within ABZR87_RS19195at 670.530 kb on + strandat 670.530 kb on + strandat 670.530 kb on + strandat 670.531 kb on - strandat 670.593 kb on + strandat 670.593 kb on + strandat 670.593 kb on + strandat 670.604 kb on + strandat 670.605 kb on - strandat 670.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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668,687 - +0.0
668,687 - -0.6
668,687 - +0.9
668,705 - ABZR87_RS19185 0.11 -0.6
668,731 - ABZR87_RS19185 0.15 +1.6
668,731 - ABZR87_RS19185 0.15 -4.8
668,920 + ABZR87_RS19185 0.43 +0.6
668,921 - ABZR87_RS19185 0.43 +0.9
669,038 - ABZR87_RS19185 0.61 +0.7
669,038 - ABZR87_RS19185 0.61 +0.3
669,038 - ABZR87_RS19185 0.61 -0.4
669,157 + ABZR87_RS19185 0.79 +0.4
669,158 - ABZR87_RS19185 0.79 -1.9
669,346 - +1.5
669,350 + +0.8
669,350 + +0.4
669,351 + -2.7
669,351 - -1.1
669,351 - +0.8
669,356 + -2.4
669,357 - -1.1
669,357 - -1.7
669,357 - -0.6
669,357 - +0.9
669,384 + +2.1
669,385 - -1.9
669,676 + ABZR87_RS19190 0.48 -1.7
669,708 + ABZR87_RS19190 0.53 +1.2
669,708 + ABZR87_RS19190 0.53 +1.0
669,709 - ABZR87_RS19190 0.54 -1.3
669,709 - ABZR87_RS19190 0.54 -1.0
669,763 + ABZR87_RS19190 0.63 +1.2
669,764 - ABZR87_RS19190 0.63 -0.9
669,973 + +0.5
670,066 - +1.1
670,089 + -0.0
670,089 + -0.1
670,090 - +1.0
670,212 + ABZR87_RS19195 0.35 -2.0
670,212 + ABZR87_RS19195 0.35 +1.5
670,213 - ABZR87_RS19195 0.35 +3.0
670,213 - ABZR87_RS19195 0.35 +2.2
670,213 - ABZR87_RS19195 0.35 -1.4
670,323 + ABZR87_RS19195 0.60 -1.1
670,323 + ABZR87_RS19195 0.60 +0.1
670,323 + ABZR87_RS19195 0.60 -1.5
670,323 + ABZR87_RS19195 0.60 -2.7
670,323 + ABZR87_RS19195 0.60 +0.7
670,324 - ABZR87_RS19195 0.60 +0.2
670,324 - ABZR87_RS19195 0.60 +1.9
670,324 - ABZR87_RS19195 0.60 +1.4
670,324 - ABZR87_RS19195 0.60 +1.7
670,324 - ABZR87_RS19195 0.60 -0.3
670,324 - ABZR87_RS19195 0.60 -1.0
670,324 - ABZR87_RS19195 0.60 +0.3
670,359 + ABZR87_RS19195 0.68 -1.4
670,360 - ABZR87_RS19195 0.68 +0.4
670,360 - ABZR87_RS19195 0.68 -1.6
670,393 - ABZR87_RS19195 0.76 -1.5
670,530 + -2.1
670,530 + -2.3
670,530 + -0.4
670,531 - -0.6
670,593 + -0.1
670,593 + +0.6
670,593 + +1.0
670,604 + +2.1
670,605 - -0.3
670,605 - -0.5

Or see this region's nucleotide sequence