Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19170 and ABZR87_RS19175 are separated by 89 nucleotides ABZR87_RS19175 and ABZR87_RS19180 are separated by 267 nucleotides
ABZR87_RS19170: ABZR87_RS19170 - DMT family transporter, at 665,053 to 665,970
_RS19170
ABZR87_RS19175: ABZR87_RS19175 - AraC family transcriptional regulator, at 666,060 to 666,839
_RS19175
ABZR87_RS19180: ABZR87_RS19180 - ATP-binding protein, at 667,107 to 668,651
_RS19180
Position (kb) 666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 665.294 kb on + strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.295 kb on - strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.297 kb on + strand, within ABZR87_RS19170 at 665.298 kb on - strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.715 kb on + strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.716 kb on - strand, within ABZR87_RS19170 at 665.897 kb on - strand at 665.933 kb on + strand at 665.933 kb on + strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.934 kb on - strand at 665.970 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.097 kb on + strand at 666.098 kb on - strand at 666.224 kb on - strand, within ABZR87_RS19175 at 666.224 kb on - strand, within ABZR87_RS19175 at 666.267 kb on + strand, within ABZR87_RS19175 at 666.268 kb on - strand, within ABZR87_RS19175 at 666.430 kb on - strand, within ABZR87_RS19175 at 666.619 kb on + strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.620 kb on - strand, within ABZR87_RS19175 at 666.952 kb on + strand at 666.952 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.998 kb on + strand at 666.999 kb on - strand at 666.999 kb on - strand at 667.030 kb on + strand at 667.030 kb on + strand at 667.227 kb on + strand at 667.227 kb on + strand at 667.228 kb on - strand at 667.288 kb on - strand, within ABZR87_RS19180 at 667.715 kb on + strand, within ABZR87_RS19180 at 667.715 kb on + strand, within ABZR87_RS19180 at 667.716 kb on - strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180 at 667.839 kb on + strand, within ABZR87_RS19180
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 665,294 + ABZR87_RS19170 0.26 +1.2 665,295 - ABZR87_RS19170 0.26 +0.9 665,295 - ABZR87_RS19170 0.26 +1.0 665,297 + ABZR87_RS19170 0.27 -1.2 665,297 + ABZR87_RS19170 0.27 -3.1 665,297 + ABZR87_RS19170 0.27 -0.7 665,298 - ABZR87_RS19170 0.27 +0.8 665,715 + ABZR87_RS19170 0.72 +2.6 665,715 + ABZR87_RS19170 0.72 +0.8 665,716 - ABZR87_RS19170 0.72 +2.2 665,716 - ABZR87_RS19170 0.72 +1.9 665,716 - ABZR87_RS19170 0.72 +0.7 665,897 - -0.1 665,933 + +1.1 665,933 + -0.6 665,934 - +0.9 665,934 - +0.3 665,934 - -1.2 665,970 + -0.6 666,097 + +2.7 666,097 + +0.7 666,097 + +1.5 666,097 + -2.0 666,097 + +0.4 666,097 + +0.2 666,098 - +0.4 666,224 - ABZR87_RS19175 0.21 +0.7 666,224 - ABZR87_RS19175 0.21 -2.5 666,267 + ABZR87_RS19175 0.27 -1.4 666,268 - ABZR87_RS19175 0.27 +1.0 666,430 - ABZR87_RS19175 0.47 -0.3 666,619 + ABZR87_RS19175 0.72 +1.2 666,620 - ABZR87_RS19175 0.72 +2.7 666,620 - ABZR87_RS19175 0.72 +0.7 666,620 - ABZR87_RS19175 0.72 +1.5 666,952 + -2.8 666,952 + +0.7 666,998 + +0.5 666,998 + +0.0 666,998 + -0.5 666,998 + +1.0 666,999 - -3.4 666,999 - +1.1 667,030 + -0.2 667,030 + +1.4 667,227 + -3.0 667,227 + -1.4 667,228 - -1.1 667,288 - ABZR87_RS19180 0.12 +0.0 667,715 + ABZR87_RS19180 0.39 +2.6 667,715 + ABZR87_RS19180 0.39 +0.4 667,716 - ABZR87_RS19180 0.39 +0.1 667,839 + ABZR87_RS19180 0.47 -0.2 667,839 + ABZR87_RS19180 0.47 +2.4 667,839 + ABZR87_RS19180 0.47 -1.3
Or see this region's nucleotide sequence