Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19155

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19140 and ABZR87_RS19145 are separated by 16 nucleotidesABZR87_RS19145 and ABZR87_RS19150 are separated by 353 nucleotidesABZR87_RS19150 and ABZR87_RS19155 are separated by 65 nucleotidesABZR87_RS19155 and ABZR87_RS19160 are separated by 274 nucleotides ABZR87_RS19140: ABZR87_RS19140 - DUF3175 domain-containing protein, at 658,181 to 658,537 _RS19140 ABZR87_RS19145: ABZR87_RS19145 - hypothetical protein, at 658,554 to 658,835 _RS19145 ABZR87_RS19150: ABZR87_RS19150 - dodecin, at 659,189 to 659,437 _RS19150 ABZR87_RS19155: ABZR87_RS19155 - acid phosphatase, at 659,503 to 661,665 _RS19155 ABZR87_RS19160: ABZR87_RS19160 - cytochrome-c peroxidase, at 661,940 to 663,346 _RS19160 Position (kb) 659 660 661 662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 658.600 kb on + strand, within ABZR87_RS19145at 658.600 kb on + strand, within ABZR87_RS19145at 658.600 kb on + strand, within ABZR87_RS19145at 658.600 kb on + strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.601 kb on - strand, within ABZR87_RS19145at 658.627 kb on + strand, within ABZR87_RS19145at 658.627 kb on + strand, within ABZR87_RS19145at 658.627 kb on + strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.628 kb on - strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.631 kb on + strand, within ABZR87_RS19145at 658.632 kb on - strand, within ABZR87_RS19145at 658.632 kb on - strand, within ABZR87_RS19145at 658.651 kb on + strand, within ABZR87_RS19145at 658.684 kb on + strand, within ABZR87_RS19145at 658.685 kb on - strand, within ABZR87_RS19145at 658.685 kb on - strand, within ABZR87_RS19145at 658.802 kb on - strand, within ABZR87_RS19145at 658.914 kb on + strandat 658.915 kb on - strandat 659.095 kb on + strandat 659.096 kb on - strandat 659.096 kb on - strandat 659.096 kb on - strandat 659.188 kb on + strandat 659.200 kb on + strandat 659.200 kb on + strandat 659.200 kb on + strandat 659.200 kb on + strandat 659.201 kb on - strandat 659.201 kb on - strandat 659.201 kb on - strandat 659.204 kb on + strandat 659.204 kb on + strandat 659.204 kb on + strandat 659.204 kb on + strandat 659.205 kb on - strandat 659.205 kb on - strandat 659.205 kb on - strandat 659.435 kb on + strandat 659.436 kb on - strandat 659.504 kb on + strandat 659.517 kb on + strandat 659.654 kb on + strandat 659.655 kb on - strandat 659.762 kb on + strand, within ABZR87_RS19155at 659.762 kb on + strand, within ABZR87_RS19155at 659.762 kb on + strand, within ABZR87_RS19155at 659.763 kb on - strand, within ABZR87_RS19155at 659.763 kb on - strand, within ABZR87_RS19155at 659.783 kb on + strand, within ABZR87_RS19155at 659.783 kb on + strand, within ABZR87_RS19155at 659.784 kb on - strand, within ABZR87_RS19155at 659.879 kb on + strand, within ABZR87_RS19155at 659.879 kb on + strand, within ABZR87_RS19155at 659.915 kb on + strand, within ABZR87_RS19155at 659.916 kb on - strand, within ABZR87_RS19155at 659.972 kb on + strand, within ABZR87_RS19155at 659.972 kb on + strand, within ABZR87_RS19155at 659.973 kb on - strand, within ABZR87_RS19155at 660.038 kb on + strand, within ABZR87_RS19155at 660.038 kb on + strand, within ABZR87_RS19155at 660.038 kb on + strand, within ABZR87_RS19155at 660.039 kb on - strand, within ABZR87_RS19155at 660.039 kb on - strand, within ABZR87_RS19155at 660.084 kb on - strand, within ABZR87_RS19155at 660.380 kb on + strand, within ABZR87_RS19155at 660.380 kb on + strand, within ABZR87_RS19155at 660.381 kb on - strand, within ABZR87_RS19155at 660.381 kb on - strand, within ABZR87_RS19155at 660.381 kb on - strand, within ABZR87_RS19155at 660.527 kb on + strand, within ABZR87_RS19155at 660.527 kb on + strand, within ABZR87_RS19155at 660.528 kb on - strand, within ABZR87_RS19155at 660.528 kb on - strand, within ABZR87_RS19155at 660.528 kb on - strand, within ABZR87_RS19155at 660.528 kb on - strand, within ABZR87_RS19155at 660.528 kb on - strand, within ABZR87_RS19155at 660.587 kb on + strand, within ABZR87_RS19155at 660.587 kb on + strand, within ABZR87_RS19155at 660.588 kb on - strand, within ABZR87_RS19155at 660.588 kb on - strand, within ABZR87_RS19155at 660.588 kb on - strand, within ABZR87_RS19155at 660.632 kb on + strand, within ABZR87_RS19155at 660.633 kb on - strand, within ABZR87_RS19155at 660.713 kb on + strand, within ABZR87_RS19155at 660.714 kb on - strand, within ABZR87_RS19155at 660.989 kb on + strand, within ABZR87_RS19155at 660.990 kb on - strand, within ABZR87_RS19155at 661.019 kb on + strand, within ABZR87_RS19155at 661.448 kb on + strand, within ABZR87_RS19155at 661.518 kb on + strandat 661.542 kb on - strandat 661.783 kb on + strandat 661.783 kb on + strandat 661.784 kb on - strandat 661.904 kb on + strandat 661.904 kb on + strandat 661.904 kb on + strandat 661.904 kb on + strandat 661.904 kb on + strandat 661.905 kb on - strandat 661.905 kb on - strandat 661.905 kb on - strandat 662.144 kb on + strand, within ABZR87_RS19160at 662.159 kb on + strand, within ABZR87_RS19160at 662.159 kb on + strand, within ABZR87_RS19160at 662.160 kb on - strand, within ABZR87_RS19160at 662.160 kb on - strand, within ABZR87_RS19160at 662.291 kb on + strand, within ABZR87_RS19160at 662.291 kb on + strand, within ABZR87_RS19160at 662.292 kb on - strand, within ABZR87_RS19160at 662.375 kb on + strand, within ABZR87_RS19160at 662.424 kb on - strand, within ABZR87_RS19160

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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658,600 + ABZR87_RS19145 0.16 +0.0
658,600 + ABZR87_RS19145 0.16 -0.8
658,600 + ABZR87_RS19145 0.16 +1.0
658,600 + ABZR87_RS19145 0.16 -0.1
658,601 - ABZR87_RS19145 0.17 -3.0
658,601 - ABZR87_RS19145 0.17 -3.4
658,601 - ABZR87_RS19145 0.17 -2.0
658,601 - ABZR87_RS19145 0.17 +3.1
658,601 - ABZR87_RS19145 0.17 -2.0
658,627 + ABZR87_RS19145 0.26 -3.3
658,627 + ABZR87_RS19145 0.26 -2.0
658,627 + ABZR87_RS19145 0.26 +2.0
658,628 - ABZR87_RS19145 0.26 -0.1
658,628 - ABZR87_RS19145 0.26 -2.2
658,628 - ABZR87_RS19145 0.26 +0.4
658,628 - ABZR87_RS19145 0.26 -1.5
658,628 - ABZR87_RS19145 0.26 -1.1
658,628 - ABZR87_RS19145 0.26 -1.0
658,631 + ABZR87_RS19145 0.27 +1.1
658,631 + ABZR87_RS19145 0.27 +2.6
658,631 + ABZR87_RS19145 0.27 -0.5
658,631 + ABZR87_RS19145 0.27 -3.1
658,631 + ABZR87_RS19145 0.27 -2.7
658,631 + ABZR87_RS19145 0.27 -3.7
658,632 - ABZR87_RS19145 0.28 -0.9
658,632 - ABZR87_RS19145 0.28 -1.6
658,651 + ABZR87_RS19145 0.34 -1.5
658,684 + ABZR87_RS19145 0.46 -2.1
658,685 - ABZR87_RS19145 0.46 +1.7
658,685 - ABZR87_RS19145 0.46 +0.7
658,802 - ABZR87_RS19145 0.88 +2.1
658,914 + -1.3
658,915 - +0.1
659,095 + -1.2
659,096 - -2.0
659,096 - -0.6
659,096 - -0.9
659,188 + -0.6
659,200 + +0.4
659,200 + -2.6
659,200 + -1.5
659,200 + -0.4
659,201 - +0.7
659,201 - +0.8
659,201 - -0.8
659,204 + -2.8
659,204 + -0.6
659,204 + -0.9
659,204 + +0.8
659,205 - -0.1
659,205 - -3.0
659,205 - -1.0
659,435 + -0.5
659,436 - +0.6
659,504 + +0.4
659,517 + -2.7
659,654 + +1.0
659,655 - -3.8
659,762 + ABZR87_RS19155 0.12 -0.9
659,762 + ABZR87_RS19155 0.12 -2.6
659,762 + ABZR87_RS19155 0.12 +1.6
659,763 - ABZR87_RS19155 0.12 -2.0
659,763 - ABZR87_RS19155 0.12 -0.7
659,783 + ABZR87_RS19155 0.13 -1.4
659,783 + ABZR87_RS19155 0.13 +0.3
659,784 - ABZR87_RS19155 0.13 +0.9
659,879 + ABZR87_RS19155 0.17 +1.2
659,879 + ABZR87_RS19155 0.17 +1.8
659,915 + ABZR87_RS19155 0.19 +0.6
659,916 - ABZR87_RS19155 0.19 -2.9
659,972 + ABZR87_RS19155 0.22 +3.5
659,972 + ABZR87_RS19155 0.22 -2.2
659,973 - ABZR87_RS19155 0.22 +0.3
660,038 + ABZR87_RS19155 0.25 +0.9
660,038 + ABZR87_RS19155 0.25 +0.1
660,038 + ABZR87_RS19155 0.25 +0.8
660,039 - ABZR87_RS19155 0.25 -0.6
660,039 - ABZR87_RS19155 0.25 +1.8
660,084 - ABZR87_RS19155 0.27 -0.6
660,380 + ABZR87_RS19155 0.41 +0.8
660,380 + ABZR87_RS19155 0.41 -0.9
660,381 - ABZR87_RS19155 0.41 +0.5
660,381 - ABZR87_RS19155 0.41 +1.6
660,381 - ABZR87_RS19155 0.41 -0.3
660,527 + ABZR87_RS19155 0.47 +1.3
660,527 + ABZR87_RS19155 0.47 +0.3
660,528 - ABZR87_RS19155 0.47 +1.3
660,528 - ABZR87_RS19155 0.47 -2.1
660,528 - ABZR87_RS19155 0.47 +1.8
660,528 - ABZR87_RS19155 0.47 -2.2
660,528 - ABZR87_RS19155 0.47 -2.3
660,587 + ABZR87_RS19155 0.50 +2.7
660,587 + ABZR87_RS19155 0.50 -1.4
660,588 - ABZR87_RS19155 0.50 -2.1
660,588 - ABZR87_RS19155 0.50 -2.3
660,588 - ABZR87_RS19155 0.50 +0.1
660,632 + ABZR87_RS19155 0.52 -2.3
660,633 - ABZR87_RS19155 0.52 +1.0
660,713 + ABZR87_RS19155 0.56 -0.3
660,714 - ABZR87_RS19155 0.56 -2.6
660,989 + ABZR87_RS19155 0.69 +2.4
660,990 - ABZR87_RS19155 0.69 +0.7
661,019 + ABZR87_RS19155 0.70 -1.1
661,448 + ABZR87_RS19155 0.90 -1.4
661,518 + +1.0
661,542 - -1.8
661,783 + -0.9
661,783 + +1.1
661,784 - -3.6
661,904 + -2.5
661,904 + -0.4
661,904 + -0.2
661,904 + +0.3
661,904 + -2.2
661,905 - -1.6
661,905 - +1.0
661,905 - +0.8
662,144 + ABZR87_RS19160 0.14 -3.6
662,159 + ABZR87_RS19160 0.16 +2.2
662,159 + ABZR87_RS19160 0.16 +2.7
662,160 - ABZR87_RS19160 0.16 -1.6
662,160 - ABZR87_RS19160 0.16 +0.2
662,291 + ABZR87_RS19160 0.25 -0.5
662,291 + ABZR87_RS19160 0.25 -0.6
662,292 - ABZR87_RS19160 0.25 +0.4
662,375 + ABZR87_RS19160 0.31 +0.7
662,424 - ABZR87_RS19160 0.34 -0.9

Or see this region's nucleotide sequence