Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18130 and ABZR87_RS18135 are separated by 296 nucleotides ABZR87_RS18135 and ABZR87_RS18140 overlap by 8 nucleotides ABZR87_RS18140 and ABZR87_RS18145 are separated by 24 nucleotides
ABZR87_RS18130: ABZR87_RS18130 - type III secretion system export apparatus subunit SctV, at 430,025 to 432,220
_RS18130
ABZR87_RS18135: ABZR87_RS18135 - FliM/FliN family flagellar motor switch protein, at 432,517 to 433,680
_RS18135
ABZR87_RS18140: ABZR87_RS18140 - type III secretion system export apparatus subunit SctR, at 433,673 to 434,332
_RS18140
ABZR87_RS18145: ABZR87_RS18145 - lytic transglycosylase domain-containing protein, at 434,357 to 435,109
_RS18145
Position (kb) 432
433
434 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 431.869 kb on + strand, within ABZR87_RS18130 at 431.950 kb on + strand, within ABZR87_RS18130 at 432.000 kb on + strand, within ABZR87_RS18130 at 432.001 kb on - strand at 432.229 kb on + strand at 432.230 kb on - strand at 432.239 kb on + strand at 432.239 kb on + strand at 432.240 kb on - strand at 432.240 kb on - strand at 432.240 kb on - strand at 432.338 kb on + strand at 432.338 kb on + strand at 432.339 kb on - strand at 432.339 kb on - strand at 432.443 kb on + strand at 432.444 kb on - strand at 432.595 kb on + strand at 432.595 kb on + strand at 432.596 kb on - strand at 432.596 kb on - strand at 433.679 kb on - strand at 433.760 kb on + strand, within ABZR87_RS18140 at 433.760 kb on + strand, within ABZR87_RS18140 at 434.097 kb on + strand, within ABZR87_RS18140 at 434.097 kb on + strand, within ABZR87_RS18140 at 434.120 kb on - strand, within ABZR87_RS18140 at 434.325 kb on - strand at 434.630 kb on + strand, within ABZR87_RS18145 at 434.631 kb on - strand, within ABZR87_RS18145
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 431,869 + ABZR87_RS18130 0.84 +0.1 431,950 + ABZR87_RS18130 0.88 -1.1 432,000 + ABZR87_RS18130 0.90 +0.4 432,001 - +0.6 432,229 + +3.2 432,230 - -1.8 432,239 + +0.7 432,239 + -3.0 432,240 - -0.4 432,240 - +0.2 432,240 - -0.1 432,338 + -2.9 432,338 + -0.0 432,339 - +0.4 432,339 - -2.4 432,443 + -0.1 432,444 - -0.2 432,595 + +0.2 432,595 + -1.6 432,596 - +0.2 432,596 - +0.9 433,679 - -0.2 433,760 + ABZR87_RS18140 0.13 -0.4 433,760 + ABZR87_RS18140 0.13 -2.1 434,097 + ABZR87_RS18140 0.64 +0.9 434,097 + ABZR87_RS18140 0.64 -0.5 434,120 - ABZR87_RS18140 0.68 +1.9 434,325 - -0.3 434,630 + ABZR87_RS18145 0.36 +1.8 434,631 - ABZR87_RS18145 0.36 +1.1
Or see this region's nucleotide sequence