Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17550

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17545 and ABZR87_RS17550 are separated by 77 nucleotidesABZR87_RS17550 and ABZR87_RS17555 are separated by 2 nucleotides ABZR87_RS17545: ABZR87_RS17545 - MFS transporter, at 297,798 to 299,162 _RS17545 ABZR87_RS17550: ABZR87_RS17550 - MFS transporter, at 299,240 to 300,565 _RS17550 ABZR87_RS17555: ABZR87_RS17555 - amidohydrolase family protein, at 300,568 to 301,500 _RS17555 Position (kb) 299 300 301Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.245 kb on + strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.246 kb on - strand, within ABZR87_RS17545at 298.252 kb on - strand, within ABZR87_RS17545at 298.511 kb on - strand, within ABZR87_RS17545at 298.794 kb on + strand, within ABZR87_RS17545at 298.794 kb on + strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.795 kb on - strand, within ABZR87_RS17545at 298.946 kb on + strand, within ABZR87_RS17545at 299.043 kb on + strandat 299.044 kb on - strandat 299.177 kb on + strandat 299.178 kb on - strandat 299.186 kb on - strandat 299.186 kb on - strandat 299.186 kb on - strandat 299.189 kb on + strandat 299.189 kb on + strandat 299.189 kb on + strandat 299.189 kb on + strandat 299.333 kb on + strandat 299.364 kb on + strandat 299.364 kb on + strandat 299.365 kb on - strandat 299.365 kb on - strandat 299.450 kb on + strand, within ABZR87_RS17550at 299.451 kb on - strand, within ABZR87_RS17550at 299.582 kb on + strand, within ABZR87_RS17550at 299.582 kb on + strand, within ABZR87_RS17550at 299.583 kb on - strand, within ABZR87_RS17550at 299.583 kb on - strand, within ABZR87_RS17550at 299.642 kb on + strand, within ABZR87_RS17550at 299.643 kb on - strand, within ABZR87_RS17550at 299.722 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.911 kb on + strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.912 kb on - strand, within ABZR87_RS17550at 299.984 kb on + strand, within ABZR87_RS17550at 299.985 kb on - strand, within ABZR87_RS17550at 299.985 kb on - strand, within ABZR87_RS17550at 300.006 kb on + strand, within ABZR87_RS17550at 300.007 kb on - strand, within ABZR87_RS17550at 300.007 kb on - strand, within ABZR87_RS17550at 300.064 kb on + strand, within ABZR87_RS17550at 300.064 kb on + strand, within ABZR87_RS17550at 300.065 kb on - strand, within ABZR87_RS17550at 300.116 kb on + strand, within ABZR87_RS17550at 300.293 kb on + strand, within ABZR87_RS17550at 300.293 kb on + strand, within ABZR87_RS17550at 300.293 kb on + strand, within ABZR87_RS17550at 300.294 kb on - strand, within ABZR87_RS17550at 300.294 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.420 kb on - strand, within ABZR87_RS17550at 300.449 kb on + strandat 300.449 kb on + strandat 300.449 kb on + strandat 300.450 kb on - strandat 300.450 kb on - strandat 300.450 kb on - strandat 300.630 kb on + strandat 300.631 kb on - strandat 300.643 kb on - strandat 300.643 kb on - strandat 300.730 kb on + strand, within ABZR87_RS17555at 300.730 kb on + strand, within ABZR87_RS17555at 300.730 kb on + strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.731 kb on - strand, within ABZR87_RS17555at 300.796 kb on + strand, within ABZR87_RS17555at 300.797 kb on - strand, within ABZR87_RS17555at 300.797 kb on - strand, within ABZR87_RS17555at 300.856 kb on + strand, within ABZR87_RS17555at 300.933 kb on + strand, within ABZR87_RS17555at 300.934 kb on - strand, within ABZR87_RS17555at 301.088 kb on + strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.089 kb on - strand, within ABZR87_RS17555at 301.261 kb on + strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.262 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.292 kb on - strand, within ABZR87_RS17555at 301.389 kb on + strand, within ABZR87_RS17555at 301.389 kb on + strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.390 kb on - strand, within ABZR87_RS17555at 301.486 kb on + strandat 301.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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298,245 + ABZR87_RS17545 0.33 -1.5
298,245 + ABZR87_RS17545 0.33 -2.4
298,245 + ABZR87_RS17545 0.33 +0.8
298,245 + ABZR87_RS17545 0.33 -3.5
298,246 - ABZR87_RS17545 0.33 +3.2
298,246 - ABZR87_RS17545 0.33 +0.9
298,246 - ABZR87_RS17545 0.33 -2.5
298,246 - ABZR87_RS17545 0.33 +1.6
298,246 - ABZR87_RS17545 0.33 -2.0
298,246 - ABZR87_RS17545 0.33 -1.1
298,246 - ABZR87_RS17545 0.33 -1.8
298,252 - ABZR87_RS17545 0.33 -0.4
298,511 - ABZR87_RS17545 0.52 +0.9
298,794 + ABZR87_RS17545 0.73 +1.0
298,794 + ABZR87_RS17545 0.73 +0.2
298,795 - ABZR87_RS17545 0.73 +1.3
298,795 - ABZR87_RS17545 0.73 +1.8
298,795 - ABZR87_RS17545 0.73 -0.2
298,795 - ABZR87_RS17545 0.73 -2.2
298,946 + ABZR87_RS17545 0.84 -0.1
299,043 + -1.6
299,044 - -1.0
299,177 + +1.8
299,178 - +0.4
299,186 - -0.9
299,186 - -0.9
299,186 - +1.1
299,189 + +2.6
299,189 + -2.9
299,189 + -3.7
299,189 + -1.9
299,333 + +0.1
299,364 + -2.2
299,364 + -2.1
299,365 - -1.2
299,365 - +1.2
299,450 + ABZR87_RS17550 0.16 -1.1
299,451 - ABZR87_RS17550 0.16 -0.4
299,582 + ABZR87_RS17550 0.26 -2.5
299,582 + ABZR87_RS17550 0.26 +1.2
299,583 - ABZR87_RS17550 0.26 -1.1
299,583 - ABZR87_RS17550 0.26 -1.0
299,642 + ABZR87_RS17550 0.30 -0.5
299,643 - ABZR87_RS17550 0.30 +1.5
299,722 + ABZR87_RS17550 0.36 -2.5
299,911 + ABZR87_RS17550 0.51 -0.7
299,911 + ABZR87_RS17550 0.51 -2.4
299,911 + ABZR87_RS17550 0.51 +2.9
299,912 - ABZR87_RS17550 0.51 +1.8
299,912 - ABZR87_RS17550 0.51 +0.6
299,912 - ABZR87_RS17550 0.51 +2.0
299,984 + ABZR87_RS17550 0.56 -3.3
299,985 - ABZR87_RS17550 0.56 +0.9
299,985 - ABZR87_RS17550 0.56 +0.3
300,006 + ABZR87_RS17550 0.58 -1.2
300,007 - ABZR87_RS17550 0.58 +1.6
300,007 - ABZR87_RS17550 0.58 +0.2
300,064 + ABZR87_RS17550 0.62 +1.1
300,064 + ABZR87_RS17550 0.62 -1.8
300,065 - ABZR87_RS17550 0.62 -0.4
300,116 + ABZR87_RS17550 0.66 -1.2
300,293 + ABZR87_RS17550 0.79 -0.8
300,293 + ABZR87_RS17550 0.79 -1.4
300,293 + ABZR87_RS17550 0.79 +2.1
300,294 - ABZR87_RS17550 0.79 -0.4
300,294 - ABZR87_RS17550 0.79 -2.6
300,420 - ABZR87_RS17550 0.89 +1.0
300,420 - ABZR87_RS17550 0.89 +0.4
300,420 - ABZR87_RS17550 0.89 -0.6
300,420 - ABZR87_RS17550 0.89 -2.3
300,449 + -0.0
300,449 + -0.4
300,449 + +0.1
300,450 - -2.1
300,450 - -0.4
300,450 - +1.0
300,630 + +2.8
300,631 - -1.1
300,643 - -0.1
300,643 - +0.9
300,730 + ABZR87_RS17555 0.17 +1.0
300,730 + ABZR87_RS17555 0.17 -0.0
300,730 + ABZR87_RS17555 0.17 +0.4
300,731 - ABZR87_RS17555 0.17 +1.4
300,731 - ABZR87_RS17555 0.17 +1.7
300,731 - ABZR87_RS17555 0.17 -1.6
300,796 + ABZR87_RS17555 0.24 +0.9
300,797 - ABZR87_RS17555 0.25 +2.8
300,797 - ABZR87_RS17555 0.25 +0.9
300,856 + ABZR87_RS17555 0.31 -0.7
300,933 + ABZR87_RS17555 0.39 -0.4
300,934 - ABZR87_RS17555 0.39 +0.8
301,088 + ABZR87_RS17555 0.56 +1.1
301,089 - ABZR87_RS17555 0.56 -0.8
301,089 - ABZR87_RS17555 0.56 +1.1
301,089 - ABZR87_RS17555 0.56 -0.7
301,089 - ABZR87_RS17555 0.56 +1.5
301,261 + ABZR87_RS17555 0.74 -3.1
301,262 - ABZR87_RS17555 0.74 +0.3
301,262 - ABZR87_RS17555 0.74 -0.5
301,262 - ABZR87_RS17555 0.74 -2.8
301,262 - ABZR87_RS17555 0.74 -1.4
301,292 - ABZR87_RS17555 0.78 +1.3
301,292 - ABZR87_RS17555 0.78 +0.1
301,292 - ABZR87_RS17555 0.78 +1.2
301,389 + ABZR87_RS17555 0.88 +0.4
301,389 + ABZR87_RS17555 0.88 -1.5
301,390 - ABZR87_RS17555 0.88 -2.7
301,390 - ABZR87_RS17555 0.88 +2.0
301,390 - ABZR87_RS17555 0.88 -0.4
301,390 - ABZR87_RS17555 0.88 +0.4
301,390 - ABZR87_RS17555 0.88 -2.6
301,486 + +0.8
301,487 - +0.8

Or see this region's nucleotide sequence