Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17010

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17005 and ABZR87_RS17010 are separated by 90 nucleotidesABZR87_RS17010 and ABZR87_RS17015 are separated by 16 nucleotidesABZR87_RS17015 and ABZR87_RS17020 are separated by 207 nucleotides ABZR87_RS17005: ABZR87_RS17005 - PLP-dependent aminotransferase family protein, at 166,597 to 167,934 _RS17005 ABZR87_RS17010: ABZR87_RS17010 - cytochrome c, at 168,025 to 168,885 _RS17010 ABZR87_RS17015: ABZR87_RS17015 - DUF1697 domain-containing protein, at 168,902 to 169,411 _RS17015 ABZR87_RS17020: ABZR87_RS17020 - hypothetical protein, at 169,619 to 170,053 _RS17020 Position (kb) 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.146 kb on + strand, within ABZR87_RS17005at 167.147 kb on - strand, within ABZR87_RS17005at 167.272 kb on + strand, within ABZR87_RS17005at 167.273 kb on - strand, within ABZR87_RS17005at 167.273 kb on - strand, within ABZR87_RS17005at 167.386 kb on + strand, within ABZR87_RS17005at 167.387 kb on - strand, within ABZR87_RS17005at 167.449 kb on + strand, within ABZR87_RS17005at 167.449 kb on + strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.478 kb on + strand, within ABZR87_RS17005at 167.716 kb on + strand, within ABZR87_RS17005at 167.716 kb on + strand, within ABZR87_RS17005at 167.716 kb on + strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.832 kb on - strandat 167.967 kb on - strandat 167.967 kb on - strandat 168.326 kb on - strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.700 kb on + strand, within ABZR87_RS17010at 168.700 kb on + strand, within ABZR87_RS17010at 168.701 kb on - strand, within ABZR87_RS17010at 168.715 kb on + strand, within ABZR87_RS17010at 168.716 kb on - strand, within ABZR87_RS17010at 168.716 kb on - strand, within ABZR87_RS17010at 168.903 kb on + strandat 168.904 kb on - strandat 169.008 kb on + strand, within ABZR87_RS17015at 169.017 kb on + strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.018 kb on - strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.096 kb on + strand, within ABZR87_RS17015at 169.212 kb on + strand, within ABZR87_RS17015at 169.212 kb on + strand, within ABZR87_RS17015at 169.212 kb on + strand, within ABZR87_RS17015at 169.213 kb on - strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.296 kb on + strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.297 kb on - strand, within ABZR87_RS17015at 169.304 kb on + strand, within ABZR87_RS17015at 169.304 kb on + strand, within ABZR87_RS17015at 169.305 kb on - strand, within ABZR87_RS17015at 169.401 kb on + strandat 169.401 kb on + strandat 169.402 kb on - strandat 169.402 kb on - strandat 169.402 kb on - strandat 169.442 kb on + strandat 169.443 kb on - strandat 169.443 kb on - strandat 169.454 kb on - strandat 169.470 kb on + strandat 169.470 kb on + strandat 169.471 kb on - strandat 169.505 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.529 kb on + strandat 169.530 kb on - strandat 169.530 kb on - strandat 169.530 kb on - strandat 169.530 kb on - strandat 169.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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167,054 + ABZR87_RS17005 0.34 -1.8
167,054 + ABZR87_RS17005 0.34 +2.1
167,054 + ABZR87_RS17005 0.34 -2.9
167,054 + ABZR87_RS17005 0.34 +0.1
167,054 + ABZR87_RS17005 0.34 -1.0
167,054 + ABZR87_RS17005 0.34 -0.4
167,054 + ABZR87_RS17005 0.34 +0.9
167,054 + ABZR87_RS17005 0.34 -1.8
167,055 - ABZR87_RS17005 0.34 -0.6
167,055 - ABZR87_RS17005 0.34 -1.4
167,055 - ABZR87_RS17005 0.34 -1.1
167,146 + ABZR87_RS17005 0.41 -2.2
167,147 - ABZR87_RS17005 0.41 -3.1
167,272 + ABZR87_RS17005 0.50 -0.0
167,273 - ABZR87_RS17005 0.51 -0.6
167,273 - ABZR87_RS17005 0.51 +1.4
167,386 + ABZR87_RS17005 0.59 +2.0
167,387 - ABZR87_RS17005 0.59 +1.6
167,449 + ABZR87_RS17005 0.64 +0.1
167,449 + ABZR87_RS17005 0.64 +0.2
167,450 - ABZR87_RS17005 0.64 +2.3
167,450 - ABZR87_RS17005 0.64 +1.1
167,450 - ABZR87_RS17005 0.64 -2.1
167,478 + ABZR87_RS17005 0.66 -1.2
167,716 + ABZR87_RS17005 0.84 +0.6
167,716 + ABZR87_RS17005 0.84 -2.0
167,716 + ABZR87_RS17005 0.84 -3.0
167,717 - ABZR87_RS17005 0.84 -0.7
167,717 - ABZR87_RS17005 0.84 -2.4
167,717 - ABZR87_RS17005 0.84 +2.2
167,717 - ABZR87_RS17005 0.84 +0.0
167,832 - -0.4
167,967 - -3.3
167,967 - +0.6
168,326 - ABZR87_RS17010 0.35 -1.9
168,511 + ABZR87_RS17010 0.56 -2.6
168,511 + ABZR87_RS17010 0.56 +1.4
168,511 + ABZR87_RS17010 0.56 -1.6
168,511 + ABZR87_RS17010 0.56 +2.0
168,511 + ABZR87_RS17010 0.56 +4.2
168,511 + ABZR87_RS17010 0.56 +1.2
168,512 - ABZR87_RS17010 0.57 -1.5
168,512 - ABZR87_RS17010 0.57 -1.9
168,512 - ABZR87_RS17010 0.57 +0.0
168,512 - ABZR87_RS17010 0.57 +0.7
168,700 + ABZR87_RS17010 0.78 +1.4
168,700 + ABZR87_RS17010 0.78 -0.3
168,701 - ABZR87_RS17010 0.79 -1.8
168,715 + ABZR87_RS17010 0.80 +2.0
168,716 - ABZR87_RS17010 0.80 -1.9
168,716 - ABZR87_RS17010 0.80 +3.1
168,903 + +2.1
168,904 - -0.3
169,008 + ABZR87_RS17015 0.21 +1.8
169,017 + ABZR87_RS17015 0.23 +0.7
169,018 - ABZR87_RS17015 0.23 +2.0
169,018 - ABZR87_RS17015 0.23 -0.4
169,018 - ABZR87_RS17015 0.23 +1.4
169,018 - ABZR87_RS17015 0.23 +0.9
169,018 - ABZR87_RS17015 0.23 +2.0
169,096 + ABZR87_RS17015 0.38 -0.8
169,096 + ABZR87_RS17015 0.38 -1.2
169,096 + ABZR87_RS17015 0.38 +1.9
169,096 + ABZR87_RS17015 0.38 -1.2
169,212 + ABZR87_RS17015 0.61 +1.1
169,212 + ABZR87_RS17015 0.61 -2.7
169,212 + ABZR87_RS17015 0.61 +0.1
169,213 - ABZR87_RS17015 0.61 +1.4
169,296 + ABZR87_RS17015 0.77 +0.7
169,296 + ABZR87_RS17015 0.77 -1.6
169,296 + ABZR87_RS17015 0.77 -0.4
169,296 + ABZR87_RS17015 0.77 +0.3
169,296 + ABZR87_RS17015 0.77 +1.4
169,296 + ABZR87_RS17015 0.77 -2.4
169,296 + ABZR87_RS17015 0.77 +3.2
169,296 + ABZR87_RS17015 0.77 -3.7
169,296 + ABZR87_RS17015 0.77 +1.7
169,297 - ABZR87_RS17015 0.77 -2.7
169,297 - ABZR87_RS17015 0.77 -1.7
169,297 - ABZR87_RS17015 0.77 -0.3
169,297 - ABZR87_RS17015 0.77 +0.4
169,297 - ABZR87_RS17015 0.77 +0.4
169,297 - ABZR87_RS17015 0.77 +1.9
169,297 - ABZR87_RS17015 0.77 +0.1
169,297 - ABZR87_RS17015 0.77 +0.3
169,297 - ABZR87_RS17015 0.77 +2.3
169,304 + ABZR87_RS17015 0.79 +0.1
169,304 + ABZR87_RS17015 0.79 +1.3
169,305 - ABZR87_RS17015 0.79 -0.1
169,401 + -1.7
169,401 + -3.2
169,402 - -2.6
169,402 - -1.4
169,402 - -1.1
169,442 + -2.7
169,443 - -0.3
169,443 - -0.3
169,454 - +0.8
169,470 + -3.1
169,470 + -1.3
169,471 - +2.0
169,505 + +1.2
169,529 + +1.5
169,529 + -1.9
169,529 + +1.4
169,529 + +0.8
169,529 + +1.0
169,529 + -2.6
169,530 - +3.8
169,530 - -2.6
169,530 - -2.9
169,530 - -0.8
169,606 + +1.3

Or see this region's nucleotide sequence