Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16725

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16720 and ABZR87_RS16725 are separated by 162 nucleotidesABZR87_RS16725 and ABZR87_RS16730 are separated by 82 nucleotides ABZR87_RS16720: ABZR87_RS16720 - collagen-like triple helix repeat-containing protein, at 100,155 to 101,300 _RS16720 ABZR87_RS16725: ABZR87_RS16725 - antibiotic biosynthesis monooxygenase, at 101,463 to 101,771 _RS16725 ABZR87_RS16730: ABZR87_RS16730 - 2-methylaconitate cis-trans isomerase PrpF, at 101,854 to 103,038 _RS16730 Position (kb) 101 102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 100.535 kb on + strand, within ABZR87_RS16720at 100.913 kb on + strand, within ABZR87_RS16720at 100.914 kb on - strand, within ABZR87_RS16720at 101.377 kb on + strandat 101.377 kb on + strandat 101.377 kb on + strandat 101.389 kb on + strandat 101.389 kb on + strandat 101.389 kb on + strandat 101.390 kb on - strandat 101.415 kb on + strandat 101.415 kb on + strandat 101.415 kb on + strandat 101.415 kb on + strandat 101.416 kb on - strandat 101.416 kb on - strandat 101.416 kb on - strandat 101.416 kb on - strandat 101.416 kb on - strandat 101.416 kb on - strandat 101.420 kb on + strandat 101.420 kb on + strandat 101.421 kb on - strandat 101.421 kb on - strandat 102.173 kb on + strand, within ABZR87_RS16730at 102.173 kb on + strand, within ABZR87_RS16730at 102.173 kb on + strand, within ABZR87_RS16730at 102.174 kb on - strand, within ABZR87_RS16730at 102.174 kb on - strand, within ABZR87_RS16730at 102.174 kb on - strand, within ABZR87_RS16730at 102.345 kb on - strand, within ABZR87_RS16730

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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100,535 + ABZR87_RS16720 0.33 +3.6
100,913 + ABZR87_RS16720 0.66 -0.2
100,914 - ABZR87_RS16720 0.66 +2.6
101,377 + -1.8
101,377 + +3.0
101,377 + -0.8
101,389 + -2.8
101,389 + +0.6
101,389 + -2.7
101,390 - -1.9
101,415 + -2.0
101,415 + +1.1
101,415 + -3.1
101,415 + -1.5
101,416 - -2.1
101,416 - +0.0
101,416 - -0.4
101,416 - +0.1
101,416 - -1.2
101,416 - +0.6
101,420 + -0.8
101,420 + +0.7
101,421 - -1.2
101,421 - -2.1
102,173 + ABZR87_RS16730 0.27 +2.0
102,173 + ABZR87_RS16730 0.27 +2.2
102,173 + ABZR87_RS16730 0.27 -4.7
102,174 - ABZR87_RS16730 0.27 -1.8
102,174 - ABZR87_RS16730 0.27 -3.7
102,174 - ABZR87_RS16730 0.27 -3.9
102,345 - ABZR87_RS16730 0.41 -2.7

Or see this region's nucleotide sequence