Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16020

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16015 and ABZR87_RS16020 are separated by 52 nucleotidesABZR87_RS16020 and ABZR87_RS16025 are separated by 79 nucleotides ABZR87_RS16015: ABZR87_RS16015 - acyltransferase, at 3,386,148 to 3,387,098 _RS16015 ABZR87_RS16020: ABZR87_RS16020 - tRNA-Ser, at 3,387,151 to 3,387,240 _RS16020 ABZR87_RS16025: ABZR87_RS16025 - serine--tRNA ligase, at 3,387,320 to 3,388,636 _RS16025 Position (kb) 3387 3388Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3386.272 kb on + strand, within ABZR87_RS16015at 3386.333 kb on + strand, within ABZR87_RS16015at 3386.412 kb on + strand, within ABZR87_RS16015at 3386.412 kb on + strand, within ABZR87_RS16015at 3386.412 kb on + strand, within ABZR87_RS16015at 3386.413 kb on - strand, within ABZR87_RS16015at 3386.413 kb on - strand, within ABZR87_RS16015at 3386.520 kb on + strand, within ABZR87_RS16015at 3386.520 kb on + strand, within ABZR87_RS16015at 3386.520 kb on + strand, within ABZR87_RS16015at 3386.521 kb on - strand, within ABZR87_RS16015at 3386.704 kb on - strand, within ABZR87_RS16015at 3386.740 kb on - strand, within ABZR87_RS16015at 3386.822 kb on + strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.901 kb on - strand, within ABZR87_RS16015at 3386.943 kb on + strand, within ABZR87_RS16015at 3386.944 kb on - strand, within ABZR87_RS16015at 3387.096 kb on + strandat 3387.097 kb on - strandat 3387.126 kb on - strandat 3387.145 kb on + strandat 3387.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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3,386,272 + ABZR87_RS16015 0.13 +2.1
3,386,333 + ABZR87_RS16015 0.19 -0.6
3,386,412 + ABZR87_RS16015 0.28 +1.1
3,386,412 + ABZR87_RS16015 0.28 -2.5
3,386,412 + ABZR87_RS16015 0.28 -2.1
3,386,413 - ABZR87_RS16015 0.28 -3.4
3,386,413 - ABZR87_RS16015 0.28 -0.4
3,386,520 + ABZR87_RS16015 0.39 -0.2
3,386,520 + ABZR87_RS16015 0.39 -1.4
3,386,520 + ABZR87_RS16015 0.39 +2.0
3,386,521 - ABZR87_RS16015 0.39 +0.1
3,386,704 - ABZR87_RS16015 0.58 -2.6
3,386,740 - ABZR87_RS16015 0.62 -1.2
3,386,822 + ABZR87_RS16015 0.71 -0.0
3,386,901 - ABZR87_RS16015 0.79 +3.2
3,386,901 - ABZR87_RS16015 0.79 -2.7
3,386,901 - ABZR87_RS16015 0.79 -1.0
3,386,901 - ABZR87_RS16015 0.79 -3.7
3,386,943 + ABZR87_RS16015 0.84 -0.3
3,386,944 - ABZR87_RS16015 0.84 -0.4
3,387,096 + +0.7
3,387,097 - +2.6
3,387,126 - +0.4
3,387,145 + +2.0
3,387,145 + +0.9

Or see this region's nucleotide sequence