Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15220

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15210 and ABZR87_RS15215 are separated by 9 nucleotidesABZR87_RS15215 and ABZR87_RS15220 are separated by 115 nucleotidesABZR87_RS15220 and ABZR87_RS15225 are separated by 172 nucleotides ABZR87_RS15210: ABZR87_RS15210 - DMT family transporter, at 3,206,153 to 3,206,986 _RS15210 ABZR87_RS15215: ABZR87_RS15215 - transcription elongation factor GreB, at 3,206,996 to 3,207,559 _RS15215 ABZR87_RS15220: ABZR87_RS15220 - tRNA-Arg, at 3,207,675 to 3,207,751 _RS15220 ABZR87_RS15225: ABZR87_RS15225 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,207,924 to 3,210,344 _RS15225 Position (kb) 3207 3208Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 3206.802 kb on - strand, within ABZR87_RS15210at 3206.874 kb on + strand, within ABZR87_RS15210at 3206.874 kb on + strand, within ABZR87_RS15210at 3206.874 kb on + strand, within ABZR87_RS15210at 3206.874 kb on + strand, within ABZR87_RS15210at 3206.874 kb on + strand, within ABZR87_RS15210at 3206.874 kb on + strand, within ABZR87_RS15210at 3206.875 kb on - strand, within ABZR87_RS15210at 3206.875 kb on - strand, within ABZR87_RS15210at 3206.963 kb on + strandat 3207.015 kb on + strandat 3207.015 kb on + strandat 3207.015 kb on + strandat 3207.074 kb on - strand, within ABZR87_RS15215at 3207.201 kb on + strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.202 kb on - strand, within ABZR87_RS15215at 3207.286 kb on + strand, within ABZR87_RS15215at 3207.287 kb on - strand, within ABZR87_RS15215at 3207.334 kb on - strand, within ABZR87_RS15215at 3207.340 kb on - strand, within ABZR87_RS15215at 3207.468 kb on + strand, within ABZR87_RS15215at 3207.468 kb on + strand, within ABZR87_RS15215at 3207.468 kb on + strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.469 kb on - strand, within ABZR87_RS15215at 3207.591 kb on - strandat 3207.592 kb on + strandat 3207.593 kb on - strandat 3207.593 kb on - strandat 3207.755 kb on + strandat 3207.755 kb on + strandat 3207.755 kb on + strandat 3207.756 kb on - strandat 3207.756 kb on - strandat 3207.758 kb on + strandat 3207.829 kb on + strandat 3207.829 kb on + strandat 3207.829 kb on + strandat 3207.851 kb on + strandat 3207.851 kb on + strandat 3207.851 kb on + strandat 3207.852 kb on - strandat 3207.947 kb on + strandat 3207.947 kb on + strandat 3207.951 kb on - strandat 3207.951 kb on - strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.036 kb on + strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.037 kb on - strandat 3208.136 kb on + strandat 3208.136 kb on + strandat 3208.136 kb on + strandat 3208.291 kb on + strand, within ABZR87_RS15225at 3208.291 kb on + strand, within ABZR87_RS15225at 3208.404 kb on + strand, within ABZR87_RS15225at 3208.404 kb on + strand, within ABZR87_RS15225at 3208.405 kb on - strand, within ABZR87_RS15225at 3208.405 kb on - strand, within ABZR87_RS15225at 3208.405 kb on - strand, within ABZR87_RS15225

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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3,206,802 - ABZR87_RS15210 0.78 -0.5
3,206,874 + ABZR87_RS15210 0.86 -3.3
3,206,874 + ABZR87_RS15210 0.86 -1.1
3,206,874 + ABZR87_RS15210 0.86 +0.4
3,206,874 + ABZR87_RS15210 0.86 -0.8
3,206,874 + ABZR87_RS15210 0.86 +1.9
3,206,874 + ABZR87_RS15210 0.86 +0.4
3,206,875 - ABZR87_RS15210 0.87 +0.9
3,206,875 - ABZR87_RS15210 0.87 +2.0
3,206,963 + +0.4
3,207,015 + +2.7
3,207,015 + -2.4
3,207,015 + -2.0
3,207,074 - ABZR87_RS15215 0.14 -0.4
3,207,201 + ABZR87_RS15215 0.36 +0.4
3,207,202 - ABZR87_RS15215 0.37 -2.1
3,207,202 - ABZR87_RS15215 0.37 +0.5
3,207,202 - ABZR87_RS15215 0.37 -0.1
3,207,202 - ABZR87_RS15215 0.37 +1.4
3,207,202 - ABZR87_RS15215 0.37 +1.1
3,207,286 + ABZR87_RS15215 0.51 -1.6
3,207,287 - ABZR87_RS15215 0.52 -1.3
3,207,334 - ABZR87_RS15215 0.60 -0.1
3,207,340 - ABZR87_RS15215 0.61 +4.1
3,207,468 + ABZR87_RS15215 0.84 -0.4
3,207,468 + ABZR87_RS15215 0.84 -2.8
3,207,468 + ABZR87_RS15215 0.84 +0.7
3,207,469 - ABZR87_RS15215 0.84 -2.3
3,207,469 - ABZR87_RS15215 0.84 -1.5
3,207,469 - ABZR87_RS15215 0.84 -1.3
3,207,469 - ABZR87_RS15215 0.84 -1.6
3,207,591 - -1.2
3,207,592 + -2.8
3,207,593 - -2.5
3,207,593 - +1.6
3,207,755 + +0.1
3,207,755 + -0.3
3,207,755 + +1.7
3,207,756 - -1.6
3,207,756 - -1.1
3,207,758 + +0.3
3,207,829 + +1.4
3,207,829 + +0.9
3,207,829 + +0.6
3,207,851 + +1.1
3,207,851 + -0.3
3,207,851 + +0.3
3,207,852 - -2.3
3,207,947 + +2.2
3,207,947 + +1.0
3,207,951 - -4.9
3,207,951 - -3.5
3,208,036 + +0.4
3,208,036 + -3.5
3,208,036 + -2.1
3,208,036 + -3.8
3,208,036 + -3.9
3,208,037 - -2.5
3,208,037 - +0.3
3,208,037 - +2.0
3,208,037 - -3.0
3,208,037 - -3.9
3,208,037 - -3.4
3,208,136 + -1.6
3,208,136 + -2.0
3,208,136 + -1.3
3,208,291 + ABZR87_RS15225 0.15 -1.5
3,208,291 + ABZR87_RS15225 0.15 -3.1
3,208,404 + ABZR87_RS15225 0.20 -3.5
3,208,404 + ABZR87_RS15225 0.20 +1.9
3,208,405 - ABZR87_RS15225 0.20 -3.2
3,208,405 - ABZR87_RS15225 0.20 -2.5
3,208,405 - ABZR87_RS15225 0.20 -1.3

Or see this region's nucleotide sequence