Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12025 and ABZR87_RS12030 overlap by 8 nucleotides ABZR87_RS12030 and ABZR87_RS12035 are separated by 35 nucleotides
ABZR87_RS12025: ABZR87_RS12025 - sugar ABC transporter ATP-binding protein, at 2,552,916 to 2,554,472
_RS12025
ABZR87_RS12030: ABZR87_RS12030 - ABC transporter permease, at 2,554,465 to 2,555,496
_RS12030
ABZR87_RS12035: ABZR87_RS12035 - ABC transporter substrate-binding protein, at 2,555,532 to 2,556,479
_RS12035
Position (kb)
2554
2555
2556 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2553.552 kb on + strand, within ABZR87_RS12025 at 2553.552 kb on + strand, within ABZR87_RS12025 at 2553.552 kb on + strand, within ABZR87_RS12025 at 2553.552 kb on + strand, within ABZR87_RS12025 at 2553.553 kb on - strand, within ABZR87_RS12025 at 2553.553 kb on - strand, within ABZR87_RS12025 at 2553.553 kb on - strand, within ABZR87_RS12025 at 2553.647 kb on + strand, within ABZR87_RS12025 at 2553.647 kb on + strand, within ABZR87_RS12025 at 2553.648 kb on - strand, within ABZR87_RS12025 at 2553.972 kb on + strand, within ABZR87_RS12025 at 2554.110 kb on + strand, within ABZR87_RS12025 at 2554.210 kb on - strand, within ABZR87_RS12025 at 2554.261 kb on + strand, within ABZR87_RS12025 at 2554.261 kb on + strand, within ABZR87_RS12025 at 2554.282 kb on - strand, within ABZR87_RS12025 at 2554.446 kb on + strand at 2554.657 kb on + strand, within ABZR87_RS12030 at 2554.658 kb on - strand, within ABZR87_RS12030 at 2554.658 kb on - strand, within ABZR87_RS12030 at 2554.658 kb on - strand, within ABZR87_RS12030 at 2554.833 kb on + strand, within ABZR87_RS12030 at 2554.833 kb on + strand, within ABZR87_RS12030 at 2554.834 kb on - strand, within ABZR87_RS12030 at 2555.120 kb on - strand, within ABZR87_RS12030 at 2555.120 kb on - strand, within ABZR87_RS12030 at 2555.191 kb on + strand, within ABZR87_RS12030 at 2555.191 kb on + strand, within ABZR87_RS12030 at 2555.191 kb on + strand, within ABZR87_RS12030 at 2555.191 kb on + strand, within ABZR87_RS12030 at 2555.192 kb on - strand, within ABZR87_RS12030 at 2555.192 kb on - strand, within ABZR87_RS12030 at 2555.192 kb on - strand, within ABZR87_RS12030 at 2555.192 kb on - strand, within ABZR87_RS12030 at 2555.192 kb on - strand, within ABZR87_RS12030 at 2555.192 kb on - strand, within ABZR87_RS12030 at 2555.192 kb on - strand, within ABZR87_RS12030 at 2555.278 kb on + strand, within ABZR87_RS12030 at 2555.278 kb on + strand, within ABZR87_RS12030 at 2555.279 kb on - strand, within ABZR87_RS12030 at 2555.279 kb on - strand, within ABZR87_RS12030 at 2555.421 kb on + strand at 2555.422 kb on - strand at 2555.590 kb on - strand at 2555.646 kb on + strand, within ABZR87_RS12035 at 2555.646 kb on + strand, within ABZR87_RS12035 at 2555.701 kb on - strand, within ABZR87_RS12035 at 2555.908 kb on - strand, within ABZR87_RS12035 at 2555.908 kb on - strand, within ABZR87_RS12035 at 2555.908 kb on - strand, within ABZR87_RS12035 at 2555.911 kb on - strand, within ABZR87_RS12035 at 2555.911 kb on - strand, within ABZR87_RS12035 at 2556.012 kb on + strand, within ABZR87_RS12035 at 2556.013 kb on - strand, within ABZR87_RS12035 at 2556.063 kb on + strand, within ABZR87_RS12035 at 2556.064 kb on - strand, within ABZR87_RS12035 at 2556.106 kb on - strand, within ABZR87_RS12035 at 2556.351 kb on + strand, within ABZR87_RS12035 at 2556.351 kb on + strand, within ABZR87_RS12035 at 2556.352 kb on - strand, within ABZR87_RS12035 at 2556.352 kb on - strand, within ABZR87_RS12035 at 2556.352 kb on - strand, within ABZR87_RS12035 at 2556.352 kb on - strand, within ABZR87_RS12035 at 2556.474 kb on + strand at 2556.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 2,553,552 + ABZR87_RS12025 0.41 -1.4 2,553,552 + ABZR87_RS12025 0.41 -0.3 2,553,552 + ABZR87_RS12025 0.41 -0.8 2,553,552 + ABZR87_RS12025 0.41 -2.1 2,553,553 - ABZR87_RS12025 0.41 -1.5 2,553,553 - ABZR87_RS12025 0.41 -1.8 2,553,553 - ABZR87_RS12025 0.41 -3.2 2,553,647 + ABZR87_RS12025 0.47 +1.1 2,553,647 + ABZR87_RS12025 0.47 +1.2 2,553,648 - ABZR87_RS12025 0.47 +1.2 2,553,972 + ABZR87_RS12025 0.68 +1.1 2,554,110 + ABZR87_RS12025 0.77 -2.8 2,554,210 - ABZR87_RS12025 0.83 +0.6 2,554,261 + ABZR87_RS12025 0.86 -2.3 2,554,261 + ABZR87_RS12025 0.86 +3.4 2,554,282 - ABZR87_RS12025 0.88 +0.0 2,554,446 + -2.0 2,554,657 + ABZR87_RS12030 0.19 -0.3 2,554,658 - ABZR87_RS12030 0.19 -2.2 2,554,658 - ABZR87_RS12030 0.19 -2.6 2,554,658 - ABZR87_RS12030 0.19 -0.1 2,554,833 + ABZR87_RS12030 0.36 -0.5 2,554,833 + ABZR87_RS12030 0.36 +0.6 2,554,834 - ABZR87_RS12030 0.36 -0.5 2,555,120 - ABZR87_RS12030 0.63 -0.6 2,555,120 - ABZR87_RS12030 0.63 +0.3 2,555,191 + ABZR87_RS12030 0.70 +1.7 2,555,191 + ABZR87_RS12030 0.70 +0.6 2,555,191 + ABZR87_RS12030 0.70 +1.0 2,555,191 + ABZR87_RS12030 0.70 -0.5 2,555,192 - ABZR87_RS12030 0.70 +1.9 2,555,192 - ABZR87_RS12030 0.70 +0.2 2,555,192 - ABZR87_RS12030 0.70 -0.4 2,555,192 - ABZR87_RS12030 0.70 +1.1 2,555,192 - ABZR87_RS12030 0.70 -2.6 2,555,192 - ABZR87_RS12030 0.70 -0.7 2,555,192 - ABZR87_RS12030 0.70 -2.8 2,555,278 + ABZR87_RS12030 0.79 -0.2 2,555,278 + ABZR87_RS12030 0.79 -1.4 2,555,279 - ABZR87_RS12030 0.79 -1.7 2,555,279 - ABZR87_RS12030 0.79 +1.1 2,555,421 + +0.9 2,555,422 - -0.7 2,555,590 - -2.1 2,555,646 + ABZR87_RS12035 0.12 -0.7 2,555,646 + ABZR87_RS12035 0.12 +1.1 2,555,701 - ABZR87_RS12035 0.18 +0.4 2,555,908 - ABZR87_RS12035 0.40 +0.6 2,555,908 - ABZR87_RS12035 0.40 +2.5 2,555,908 - ABZR87_RS12035 0.40 +1.4 2,555,911 - ABZR87_RS12035 0.40 +2.1 2,555,911 - ABZR87_RS12035 0.40 -1.4 2,556,012 + ABZR87_RS12035 0.51 -0.1 2,556,013 - ABZR87_RS12035 0.51 +1.5 2,556,063 + ABZR87_RS12035 0.56 -0.4 2,556,064 - ABZR87_RS12035 0.56 +0.9 2,556,106 - ABZR87_RS12035 0.61 +1.0 2,556,351 + ABZR87_RS12035 0.86 +0.7 2,556,351 + ABZR87_RS12035 0.86 -1.0 2,556,352 - ABZR87_RS12035 0.86 +0.5 2,556,352 - ABZR87_RS12035 0.86 -2.1 2,556,352 - ABZR87_RS12035 0.86 -3.5 2,556,352 - ABZR87_RS12035 0.86 -1.2 2,556,474 + -1.2 2,556,475 - +0.1
Or see this region's nucleotide sequence