Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11335 and ABZR87_RS11340 are separated by 137 nucleotides ABZR87_RS11340 and ABZR87_RS11345 are separated by 93 nucleotides ABZR87_RS11345 and ABZR87_RS11350 are separated by 41 nucleotides ABZR87_RS11350 and ABZR87_RS11355 are separated by 3 nucleotides
ABZR87_RS11335: ABZR87_RS11335 - ferredoxin--NADP reductase, at 2,405,345 to 2,406,121
_RS11335
ABZR87_RS11340: ABZR87_RS11340 - asparaginase, at 2,406,259 to 2,407,251
_RS11340
ABZR87_RS11345: ABZR87_RS11345 - 30S ribosomal protein S6, at 2,407,345 to 2,407,713
_RS11345
ABZR87_RS11350: ABZR87_RS11350 - primosomal replication protein N, at 2,407,755 to 2,408,081
_RS11350
ABZR87_RS11355: ABZR87_RS11355 - 30S ribosomal protein S18, at 2,408,085 to 2,408,372
_RS11355
Position (kb)
2406
2407
2408 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2405.269 kb on - strand at 2406.119 kb on + strand at 2406.120 kb on - strand at 2406.120 kb on - strand at 2406.120 kb on - strand at 2406.270 kb on + strand at 2406.270 kb on + strand at 2406.464 kb on + strand, within ABZR87_RS11340 at 2406.464 kb on + strand, within ABZR87_RS11340 at 2406.487 kb on - strand, within ABZR87_RS11340 at 2406.487 kb on - strand, within ABZR87_RS11340 at 2406.594 kb on + strand, within ABZR87_RS11340 at 2406.605 kb on + strand, within ABZR87_RS11340 at 2406.605 kb on + strand, within ABZR87_RS11340 at 2406.605 kb on + strand, within ABZR87_RS11340 at 2406.772 kb on + strand, within ABZR87_RS11340 at 2406.772 kb on + strand, within ABZR87_RS11340 at 2406.772 kb on + strand, within ABZR87_RS11340 at 2406.772 kb on + strand, within ABZR87_RS11340 at 2406.773 kb on - strand, within ABZR87_RS11340 at 2406.773 kb on - strand, within ABZR87_RS11340 at 2406.773 kb on - strand, within ABZR87_RS11340 at 2406.773 kb on - strand, within ABZR87_RS11340 at 2406.773 kb on - strand, within ABZR87_RS11340 at 2406.931 kb on + strand, within ABZR87_RS11340 at 2406.931 kb on + strand, within ABZR87_RS11340 at 2406.932 kb on - strand, within ABZR87_RS11340 at 2406.932 kb on - strand, within ABZR87_RS11340 at 2407.159 kb on + strand at 2407.159 kb on + strand at 2407.159 kb on + strand at 2407.159 kb on + strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.160 kb on - strand at 2407.161 kb on + strand at 2407.161 kb on + strand at 2407.161 kb on + strand at 2407.162 kb on - strand at 2407.162 kb on - strand at 2407.162 kb on - strand at 2407.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 2,405,269 - -1.6 2,406,119 + -0.5 2,406,120 - +0.7 2,406,120 - +1.0 2,406,120 - -2.8 2,406,270 + -0.9 2,406,270 + -1.9 2,406,464 + ABZR87_RS11340 0.21 -2.1 2,406,464 + ABZR87_RS11340 0.21 +1.8 2,406,487 - ABZR87_RS11340 0.23 -2.2 2,406,487 - ABZR87_RS11340 0.23 -0.2 2,406,594 + ABZR87_RS11340 0.34 +0.0 2,406,605 + ABZR87_RS11340 0.35 +1.7 2,406,605 + ABZR87_RS11340 0.35 +0.9 2,406,605 + ABZR87_RS11340 0.35 +0.9 2,406,772 + ABZR87_RS11340 0.52 +1.1 2,406,772 + ABZR87_RS11340 0.52 -0.3 2,406,772 + ABZR87_RS11340 0.52 +0.7 2,406,772 + ABZR87_RS11340 0.52 -1.2 2,406,773 - ABZR87_RS11340 0.52 +1.8 2,406,773 - ABZR87_RS11340 0.52 +0.7 2,406,773 - ABZR87_RS11340 0.52 -0.6 2,406,773 - ABZR87_RS11340 0.52 +0.7 2,406,773 - ABZR87_RS11340 0.52 +1.1 2,406,931 + ABZR87_RS11340 0.68 +0.8 2,406,931 + ABZR87_RS11340 0.68 +1.1 2,406,932 - ABZR87_RS11340 0.68 +1.1 2,406,932 - ABZR87_RS11340 0.68 +2.8 2,407,159 + +0.5 2,407,159 + -2.4 2,407,159 + +0.3 2,407,159 + +0.5 2,407,160 - -0.8 2,407,160 - +0.1 2,407,160 - -2.6 2,407,160 - +0.9 2,407,160 - -1.3 2,407,160 - +2.1 2,407,160 - -2.8 2,407,160 - +0.8 2,407,160 - +0.4 2,407,161 + -0.6 2,407,161 + -1.6 2,407,161 + -1.2 2,407,162 - +1.1 2,407,162 - +2.4 2,407,162 - +1.3 2,407,272 + +1.2
Or see this region's nucleotide sequence