Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10405 and ABZR87_RS10410 overlap by 8 nucleotides ABZR87_RS10410 and ABZR87_RS10415 are separated by 20 nucleotides ABZR87_RS10415 and ABZR87_RS10420 are separated by 98 nucleotides
ABZR87_RS10405: ABZR87_RS10405 - lipoprotein-releasing ABC transporter permease subunit, at 2,204,515 to 2,205,765
_RS10405
ABZR87_RS10410: ABZR87_RS10410 - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,205,758 to 2,206,486
_RS10410
ABZR87_RS10415: ABZR87_RS10415 - DUF2845 domain-containing protein, at 2,206,507 to 2,206,812
_RS10415
ABZR87_RS10420: ABZR87_RS10420 - TatD family hydrolase, at 2,206,911 to 2,207,723
_RS10420
Position (kb)
2205
2206
2207 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2205.757 kb on + strand at 2205.757 kb on + strand at 2206.595 kb on + strand, within ABZR87_RS10415 at 2206.595 kb on + strand, within ABZR87_RS10415 at 2206.595 kb on + strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.596 kb on - strand, within ABZR87_RS10415 at 2206.720 kb on - strand, within ABZR87_RS10415 at 2206.720 kb on - strand, within ABZR87_RS10415 at 2206.721 kb on + strand, within ABZR87_RS10415 at 2206.721 kb on + strand, within ABZR87_RS10415 at 2206.721 kb on + strand, within ABZR87_RS10415 at 2206.838 kb on + strand at 2206.839 kb on - strand at 2206.857 kb on + strand at 2206.857 kb on + strand at 2206.857 kb on + strand at 2206.857 kb on + strand at 2207.082 kb on + strand, within ABZR87_RS10420 at 2207.226 kb on + strand, within ABZR87_RS10420 at 2207.227 kb on - strand, within ABZR87_RS10420 at 2207.448 kb on - strand, within ABZR87_RS10420
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 2,205,757 + +0.5 2,205,757 + +0.2 2,206,595 + ABZR87_RS10415 0.29 -0.7 2,206,595 + ABZR87_RS10415 0.29 -0.8 2,206,595 + ABZR87_RS10415 0.29 -2.6 2,206,596 - ABZR87_RS10415 0.29 -1.9 2,206,596 - ABZR87_RS10415 0.29 +2.2 2,206,596 - ABZR87_RS10415 0.29 +0.0 2,206,596 - ABZR87_RS10415 0.29 +1.3 2,206,596 - ABZR87_RS10415 0.29 +0.2 2,206,596 - ABZR87_RS10415 0.29 -1.7 2,206,596 - ABZR87_RS10415 0.29 -2.4 2,206,596 - ABZR87_RS10415 0.29 +2.0 2,206,596 - ABZR87_RS10415 0.29 +0.6 2,206,596 - ABZR87_RS10415 0.29 -1.1 2,206,596 - ABZR87_RS10415 0.29 -1.5 2,206,596 - ABZR87_RS10415 0.29 -2.6 2,206,720 - ABZR87_RS10415 0.70 +1.9 2,206,720 - ABZR87_RS10415 0.70 -0.8 2,206,721 + ABZR87_RS10415 0.70 +0.8 2,206,721 + ABZR87_RS10415 0.70 +2.8 2,206,721 + ABZR87_RS10415 0.70 +0.9 2,206,838 + -0.6 2,206,839 - +1.0 2,206,857 + +0.9 2,206,857 + +0.1 2,206,857 + -2.0 2,206,857 + -1.1 2,207,082 + ABZR87_RS10420 0.21 -1.0 2,207,226 + ABZR87_RS10420 0.39 -0.6 2,207,227 - ABZR87_RS10420 0.39 +0.8 2,207,448 - ABZR87_RS10420 0.66 -0.9
Or see this region's nucleotide sequence