Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS10275 and ABZR87_RS10280 are separated by 586 nucleotides ABZR87_RS10280 and ABZR87_RS10285 overlap by 17 nucleotides
ABZR87_RS10275: ABZR87_RS10275 - DUF5818 domain-containing protein, at 2,177,320 to 2,177,631
_RS10275
ABZR87_RS10280: ABZR87_RS10280 - response regulator transcription factor, at 2,178,218 to 2,178,931
_RS10280
ABZR87_RS10285: ABZR87_RS10285 - FecR domain-containing protein, at 2,178,915 to 2,180,594
_RS10285
Position (kb)
2178
2179 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2177.275 kb on + strand at 2177.275 kb on + strand at 2177.321 kb on + strand at 2177.321 kb on + strand at 2177.321 kb on + strand at 2177.321 kb on + strand at 2177.322 kb on - strand at 2177.322 kb on - strand at 2177.588 kb on - strand, within ABZR87_RS10275 at 2177.592 kb on + strand, within ABZR87_RS10275 at 2177.593 kb on - strand, within ABZR87_RS10275 at 2177.603 kb on - strand at 2177.603 kb on - strand at 2177.679 kb on - strand at 2177.687 kb on + strand at 2177.718 kb on + strand at 2177.718 kb on + strand at 2177.718 kb on + strand at 2177.719 kb on - strand at 2177.719 kb on - strand at 2177.800 kb on + strand at 2177.800 kb on + strand at 2177.800 kb on + strand at 2177.801 kb on - strand at 2177.841 kb on + strand at 2177.841 kb on + strand at 2177.842 kb on - strand at 2177.842 kb on - strand at 2177.842 kb on - strand at 2177.842 kb on - strand at 2177.873 kb on + strand at 2177.873 kb on + strand at 2177.874 kb on - strand at 2177.874 kb on - strand at 2177.874 kb on - strand at 2177.874 kb on - strand at 2177.874 kb on - strand at 2177.874 kb on - strand at 2177.874 kb on - strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.877 kb on + strand at 2177.878 kb on - strand at 2177.878 kb on - strand at 2177.878 kb on - strand at 2177.878 kb on - strand at 2177.878 kb on - strand at 2177.880 kb on + strand at 2177.880 kb on + strand at 2177.926 kb on + strand at 2177.927 kb on - strand at 2177.927 kb on - strand at 2177.998 kb on + strand at 2177.998 kb on + strand at 2177.998 kb on + strand at 2177.998 kb on + strand at 2177.999 kb on - strand at 2177.999 kb on - strand at 2177.999 kb on - strand at 2177.999 kb on - strand at 2177.999 kb on - strand at 2177.999 kb on - strand at 2178.049 kb on + strand at 2178.049 kb on + strand at 2178.050 kb on - strand at 2178.101 kb on + strand at 2178.101 kb on + strand at 2178.101 kb on + strand at 2178.101 kb on + strand at 2178.101 kb on + strand at 2178.101 kb on + strand at 2178.102 kb on - strand at 2178.102 kb on - strand at 2178.102 kb on - strand at 2178.225 kb on + strand at 2178.226 kb on - strand at 2178.240 kb on + strand at 2178.518 kb on + strand, within ABZR87_RS10280 at 2178.518 kb on + strand, within ABZR87_RS10280 at 2178.713 kb on + strand, within ABZR87_RS10280 at 2178.713 kb on + strand, within ABZR87_RS10280 at 2178.714 kb on - strand, within ABZR87_RS10280 at 2178.714 kb on - strand, within ABZR87_RS10280 at 2178.714 kb on - strand, within ABZR87_RS10280 at 2178.714 kb on - strand, within ABZR87_RS10280 at 2178.714 kb on - strand, within ABZR87_RS10280 at 2178.714 kb on - strand, within ABZR87_RS10280 at 2178.814 kb on + strand, within ABZR87_RS10280 at 2178.814 kb on + strand, within ABZR87_RS10280 at 2178.814 kb on + strand, within ABZR87_RS10280 at 2178.815 kb on - strand, within ABZR87_RS10280 at 2178.815 kb on - strand, within ABZR87_RS10280 at 2178.815 kb on - strand, within ABZR87_RS10280 at 2178.815 kb on - strand, within ABZR87_RS10280 at 2178.878 kb on + strand at 2178.878 kb on + strand at 2178.878 kb on + strand at 2178.878 kb on + strand at 2179.050 kb on + strand at 2179.051 kb on - strand at 2179.095 kb on + strand, within ABZR87_RS10285 at 2179.095 kb on + strand, within ABZR87_RS10285 at 2179.095 kb on + strand, within ABZR87_RS10285 at 2179.095 kb on + strand, within ABZR87_RS10285 at 2179.096 kb on - strand, within ABZR87_RS10285 at 2179.096 kb on - strand, within ABZR87_RS10285 at 2179.278 kb on - strand, within ABZR87_RS10285 at 2179.278 kb on - strand, within ABZR87_RS10285 at 2179.881 kb on + strand, within ABZR87_RS10285 at 2179.881 kb on + strand, within ABZR87_RS10285 at 2179.881 kb on + strand, within ABZR87_RS10285 at 2179.881 kb on + strand, within ABZR87_RS10285 at 2179.881 kb on + strand, within ABZR87_RS10285 at 2179.882 kb on - strand, within ABZR87_RS10285 at 2179.885 kb on + strand, within ABZR87_RS10285 at 2179.885 kb on + strand, within ABZR87_RS10285 at 2179.885 kb on + strand, within ABZR87_RS10285 at 2179.885 kb on + strand, within ABZR87_RS10285 at 2179.885 kb on + strand, within ABZR87_RS10285 at 2179.885 kb on + strand, within ABZR87_RS10285 at 2179.886 kb on - strand, within ABZR87_RS10285 at 2179.886 kb on - strand, within ABZR87_RS10285
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 2,177,275 + +0.4 2,177,275 + +1.2 2,177,321 + +0.7 2,177,321 + -0.6 2,177,321 + +0.6 2,177,321 + +0.8 2,177,322 - +0.3 2,177,322 - -0.3 2,177,588 - ABZR87_RS10275 0.86 +1.6 2,177,592 + ABZR87_RS10275 0.87 +1.0 2,177,593 - ABZR87_RS10275 0.88 -1.9 2,177,603 - -0.3 2,177,603 - +0.6 2,177,679 - +1.6 2,177,687 + -2.2 2,177,718 + +0.6 2,177,718 + -0.4 2,177,718 + +0.3 2,177,719 - +1.4 2,177,719 - +1.1 2,177,800 + -0.3 2,177,800 + +1.7 2,177,800 + +1.3 2,177,801 - -0.8 2,177,841 + +0.9 2,177,841 + -1.2 2,177,842 - +1.5 2,177,842 - +1.8 2,177,842 - +2.3 2,177,842 - -3.5 2,177,873 + +0.8 2,177,873 + +0.1 2,177,874 - -2.7 2,177,874 - -0.2 2,177,874 - -3.2 2,177,874 - -1.4 2,177,874 - +0.6 2,177,874 - -3.2 2,177,874 - -0.5 2,177,877 + -2.6 2,177,877 + -1.0 2,177,877 + -2.1 2,177,877 + -0.5 2,177,877 + -0.3 2,177,877 + -0.2 2,177,877 + +0.8 2,177,877 + -1.9 2,177,877 + +2.8 2,177,877 + +0.3 2,177,877 + -0.5 2,177,878 - +1.7 2,177,878 - -0.6 2,177,878 - +1.2 2,177,878 - +0.6 2,177,878 - +1.3 2,177,880 + -0.3 2,177,880 + +0.3 2,177,926 + -0.7 2,177,927 - +0.3 2,177,927 - +0.7 2,177,998 + +0.6 2,177,998 + -3.2 2,177,998 + +2.3 2,177,998 + +0.6 2,177,999 - +1.0 2,177,999 - -1.8 2,177,999 - +1.6 2,177,999 - -1.2 2,177,999 - +2.1 2,177,999 - -1.2 2,178,049 + -0.0 2,178,049 + +0.4 2,178,050 - -4.2 2,178,101 + +1.3 2,178,101 + -0.8 2,178,101 + -1.0 2,178,101 + -0.9 2,178,101 + -2.2 2,178,101 + +0.8 2,178,102 - +1.6 2,178,102 - -0.3 2,178,102 - +0.8 2,178,225 + -1.3 2,178,226 - +0.6 2,178,240 + -2.2 2,178,518 + ABZR87_RS10280 0.42 +1.2 2,178,518 + ABZR87_RS10280 0.42 -0.7 2,178,713 + ABZR87_RS10280 0.69 -2.7 2,178,713 + ABZR87_RS10280 0.69 +1.4 2,178,714 - ABZR87_RS10280 0.69 +0.3 2,178,714 - ABZR87_RS10280 0.69 +0.1 2,178,714 - ABZR87_RS10280 0.69 +0.0 2,178,714 - ABZR87_RS10280 0.69 +0.6 2,178,714 - ABZR87_RS10280 0.69 -0.8 2,178,714 - ABZR87_RS10280 0.69 +1.6 2,178,814 + ABZR87_RS10280 0.83 -2.7 2,178,814 + ABZR87_RS10280 0.83 -2.3 2,178,814 + ABZR87_RS10280 0.83 -1.5 2,178,815 - ABZR87_RS10280 0.84 -1.1 2,178,815 - ABZR87_RS10280 0.84 +0.3 2,178,815 - ABZR87_RS10280 0.84 +0.4 2,178,815 - ABZR87_RS10280 0.84 +0.7 2,178,878 + -0.5 2,178,878 + +1.8 2,178,878 + -1.7 2,178,878 + -0.7 2,179,050 + +0.6 2,179,051 - -1.6 2,179,095 + ABZR87_RS10285 0.11 -1.5 2,179,095 + ABZR87_RS10285 0.11 +1.1 2,179,095 + ABZR87_RS10285 0.11 +0.1 2,179,095 + ABZR87_RS10285 0.11 +0.8 2,179,096 - ABZR87_RS10285 0.11 +3.1 2,179,096 - ABZR87_RS10285 0.11 +1.1 2,179,278 - ABZR87_RS10285 0.22 +0.6 2,179,278 - ABZR87_RS10285 0.22 +0.7 2,179,881 + ABZR87_RS10285 0.57 +0.5 2,179,881 + ABZR87_RS10285 0.57 -1.1 2,179,881 + ABZR87_RS10285 0.57 +2.0 2,179,881 + ABZR87_RS10285 0.57 -1.3 2,179,881 + ABZR87_RS10285 0.57 +0.5 2,179,882 - ABZR87_RS10285 0.58 -0.2 2,179,885 + ABZR87_RS10285 0.58 -1.9 2,179,885 + ABZR87_RS10285 0.58 +0.8 2,179,885 + ABZR87_RS10285 0.58 +2.6 2,179,885 + ABZR87_RS10285 0.58 +0.5 2,179,885 + ABZR87_RS10285 0.58 -0.8 2,179,885 + ABZR87_RS10285 0.58 -1.6 2,179,886 - ABZR87_RS10285 0.58 -1.3 2,179,886 - ABZR87_RS10285 0.58 -0.2
Or see this region's nucleotide sequence