Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09615

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09605 and ABZR87_RS09610 are separated by 23 nucleotidesABZR87_RS09610 and ABZR87_RS09615 are separated by 73 nucleotidesABZR87_RS09615 and ABZR87_RS09620 are separated by 104 nucleotidesABZR87_RS09620 and ABZR87_RS09625 are separated by 107 nucleotides ABZR87_RS09605: ABZR87_RS09605 - ribosome maturation factor RimM, at 2,038,356 to 2,038,907 _RS09605 ABZR87_RS09610: ABZR87_RS09610 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 2,038,931 to 2,039,719 _RS09610 ABZR87_RS09615: ABZR87_RS09615 - 50S ribosomal protein L19, at 2,039,793 to 2,040,179 _RS09615 ABZR87_RS09620: ABZR87_RS09620 - CoA pyrophosphatase, at 2,040,284 to 2,040,988 _RS09620 ABZR87_RS09625: ABZR87_RS09625 - CobD/CbiB family protein, at 2,041,096 to 2,042,037 _RS09625 Position (kb) 2039 2040 2041Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2040.097 kb on - strand, within ABZR87_RS09615at 2040.099 kb on + strand, within ABZR87_RS09615at 2040.100 kb on - strand, within ABZR87_RS09615at 2040.177 kb on + strandat 2040.177 kb on + strandat 2040.178 kb on - strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.250 kb on + strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.251 kb on - strandat 2040.544 kb on + strand, within ABZR87_RS09620at 2040.689 kb on + strand, within ABZR87_RS09620at 2040.690 kb on - strand, within ABZR87_RS09620at 2040.690 kb on - strand, within ABZR87_RS09620at 2040.690 kb on - strand, within ABZR87_RS09620at 2040.690 kb on - strand, within ABZR87_RS09620at 2040.690 kb on - strand, within ABZR87_RS09620at 2040.690 kb on - strand, within ABZR87_RS09620at 2040.690 kb on - strand, within ABZR87_RS09620at 2040.869 kb on + strand, within ABZR87_RS09620at 2040.869 kb on + strand, within ABZR87_RS09620at 2040.869 kb on + strand, within ABZR87_RS09620at 2040.870 kb on - strand, within ABZR87_RS09620at 2040.870 kb on - strand, within ABZR87_RS09620at 2040.870 kb on - strand, within ABZR87_RS09620at 2040.870 kb on - strand, within ABZR87_RS09620at 2040.969 kb on - strandat 2040.969 kb on - strandat 2040.986 kb on + strandat 2041.002 kb on - strandat 2041.040 kb on + strandat 2041.040 kb on + strandat 2041.112 kb on + strandat 2041.112 kb on + strandat 2041.113 kb on - strandat 2041.113 kb on - strandat 2041.168 kb on + strandat 2041.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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2,040,097 - ABZR87_RS09615 0.79 -0.5
2,040,099 + ABZR87_RS09615 0.79 +1.8
2,040,100 - ABZR87_RS09615 0.79 -0.8
2,040,177 + -1.5
2,040,177 + -2.3
2,040,178 - +0.9
2,040,250 + -3.1
2,040,250 + +0.5
2,040,250 + -3.4
2,040,250 + -3.3
2,040,250 + -0.2
2,040,250 + +1.2
2,040,250 + +2.6
2,040,250 + +1.1
2,040,250 + -2.7
2,040,250 + +0.3
2,040,250 + -0.8
2,040,250 + -2.5
2,040,250 + +0.4
2,040,250 + -3.3
2,040,250 + -2.9
2,040,250 + -2.7
2,040,251 - -0.9
2,040,251 - +1.2
2,040,251 - -0.4
2,040,251 - -1.8
2,040,251 - +0.5
2,040,251 - +0.7
2,040,251 - +1.0
2,040,251 - -0.7
2,040,251 - +0.4
2,040,251 - -1.2
2,040,251 - +0.4
2,040,251 - -0.5
2,040,251 - +1.0
2,040,251 - +0.3
2,040,251 - +0.1
2,040,251 - -3.1
2,040,544 + ABZR87_RS09620 0.37 +0.1
2,040,689 + ABZR87_RS09620 0.57 +1.4
2,040,690 - ABZR87_RS09620 0.58 +0.6
2,040,690 - ABZR87_RS09620 0.58 +0.5
2,040,690 - ABZR87_RS09620 0.58 +0.3
2,040,690 - ABZR87_RS09620 0.58 -2.1
2,040,690 - ABZR87_RS09620 0.58 -1.5
2,040,690 - ABZR87_RS09620 0.58 -0.8
2,040,690 - ABZR87_RS09620 0.58 +0.9
2,040,869 + ABZR87_RS09620 0.83 -3.3
2,040,869 + ABZR87_RS09620 0.83 +2.5
2,040,869 + ABZR87_RS09620 0.83 +0.4
2,040,870 - ABZR87_RS09620 0.83 -1.3
2,040,870 - ABZR87_RS09620 0.83 -1.3
2,040,870 - ABZR87_RS09620 0.83 +0.6
2,040,870 - ABZR87_RS09620 0.83 +0.1
2,040,969 - +0.7
2,040,969 - +0.2
2,040,986 + -2.3
2,041,002 - -3.9
2,041,040 + +1.6
2,041,040 + +0.9
2,041,112 + +2.8
2,041,112 + -0.9
2,041,113 - +1.1
2,041,113 - +4.6
2,041,168 + +1.4
2,041,168 + -0.2

Or see this region's nucleotide sequence