Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08480

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08475 and ABZR87_RS08480 are separated by 29 nucleotidesABZR87_RS08480 and ABZR87_RS08485 are separated by 31 nucleotidesABZR87_RS08485 and ABZR87_RS08490 are separated by 45 nucleotides ABZR87_RS08475: ABZR87_RS08475 - glycosyltransferase family 87 protein, at 1,799,920 to 1,801,230 _RS08475 ABZR87_RS08480: ABZR87_RS08480 - TadG family pilus assembly protein, at 1,801,260 to 1,802,282 _RS08480 ABZR87_RS08485: ABZR87_RS08485 - TadE/TadG family type IV pilus assembly protein, at 1,802,314 to 1,802,760 _RS08485 ABZR87_RS08490: ABZR87_RS08490 - type II secretion system F family protein, at 1,802,806 to 1,803,750 _RS08490 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1800.328 kb on + strand, within ABZR87_RS08475at 1800.353 kb on + strand, within ABZR87_RS08475at 1800.353 kb on + strand, within ABZR87_RS08475at 1800.354 kb on - strand, within ABZR87_RS08475at 1800.354 kb on - strand, within ABZR87_RS08475at 1800.366 kb on + strand, within ABZR87_RS08475at 1800.413 kb on + strand, within ABZR87_RS08475at 1800.413 kb on + strand, within ABZR87_RS08475at 1800.413 kb on + strand, within ABZR87_RS08475at 1800.413 kb on + strand, within ABZR87_RS08475at 1800.413 kb on + strand, within ABZR87_RS08475at 1800.413 kb on + strand, within ABZR87_RS08475at 1800.414 kb on - strand, within ABZR87_RS08475at 1800.818 kb on + strand, within ABZR87_RS08475at 1800.819 kb on - strand, within ABZR87_RS08475at 1800.819 kb on - strand, within ABZR87_RS08475at 1800.819 kb on - strand, within ABZR87_RS08475at 1800.851 kb on + strand, within ABZR87_RS08475at 1800.851 kb on + strand, within ABZR87_RS08475at 1800.852 kb on - strand, within ABZR87_RS08475at 1800.911 kb on + strand, within ABZR87_RS08475at 1800.967 kb on + strand, within ABZR87_RS08475at 1800.968 kb on - strand, within ABZR87_RS08475at 1801.078 kb on - strand, within ABZR87_RS08475at 1801.078 kb on - strand, within ABZR87_RS08475at 1801.262 kb on - strandat 1801.285 kb on + strandat 1801.285 kb on + strandat 1801.295 kb on - strandat 1801.354 kb on + strandat 1801.354 kb on + strandat 1801.354 kb on + strandat 1801.355 kb on - strandat 1801.355 kb on - strandat 1801.444 kb on - strand, within ABZR87_RS08480at 1801.465 kb on + strand, within ABZR87_RS08480at 1801.487 kb on + strand, within ABZR87_RS08480at 1801.488 kb on - strand, within ABZR87_RS08480at 1801.489 kb on + strand, within ABZR87_RS08480at 1801.535 kb on + strand, within ABZR87_RS08480at 1801.668 kb on + strand, within ABZR87_RS08480at 1801.668 kb on + strand, within ABZR87_RS08480at 1801.668 kb on + strand, within ABZR87_RS08480at 1801.668 kb on + strand, within ABZR87_RS08480at 1801.669 kb on - strand, within ABZR87_RS08480at 1801.669 kb on - strand, within ABZR87_RS08480at 1801.669 kb on - strand, within ABZR87_RS08480at 1801.672 kb on + strand, within ABZR87_RS08480at 1801.672 kb on + strand, within ABZR87_RS08480at 1801.672 kb on + strand, within ABZR87_RS08480at 1801.672 kb on + strand, within ABZR87_RS08480at 1801.673 kb on - strand, within ABZR87_RS08480at 1801.673 kb on - strand, within ABZR87_RS08480at 1801.717 kb on + strand, within ABZR87_RS08480at 1801.717 kb on + strand, within ABZR87_RS08480at 1801.718 kb on - strand, within ABZR87_RS08480at 1801.718 kb on - strand, within ABZR87_RS08480at 1801.987 kb on + strand, within ABZR87_RS08480at 1802.167 kb on + strand, within ABZR87_RS08480at 1802.167 kb on + strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.168 kb on - strand, within ABZR87_RS08480at 1802.402 kb on + strand, within ABZR87_RS08485at 1802.403 kb on - strand, within ABZR87_RS08485at 1802.403 kb on - strand, within ABZR87_RS08485at 1802.403 kb on - strand, within ABZR87_RS08485at 1802.413 kb on - strand, within ABZR87_RS08485at 1802.413 kb on - strand, within ABZR87_RS08485at 1802.507 kb on + strand, within ABZR87_RS08485at 1802.507 kb on + strand, within ABZR87_RS08485at 1802.507 kb on + strand, within ABZR87_RS08485at 1802.508 kb on - strand, within ABZR87_RS08485at 1802.615 kb on + strand, within ABZR87_RS08485at 1802.615 kb on + strand, within ABZR87_RS08485at 1802.737 kb on - strandat 1802.808 kb on - strandat 1803.109 kb on + strand, within ABZR87_RS08490at 1803.110 kb on - strand, within ABZR87_RS08490at 1803.143 kb on + strand, within ABZR87_RS08490at 1803.144 kb on - strand, within ABZR87_RS08490

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,800,328 + ABZR87_RS08475 0.31 -2.0
1,800,353 + ABZR87_RS08475 0.33 -2.6
1,800,353 + ABZR87_RS08475 0.33 -1.9
1,800,354 - ABZR87_RS08475 0.33 +5.3
1,800,354 - ABZR87_RS08475 0.33 +3.0
1,800,366 + ABZR87_RS08475 0.34 +1.1
1,800,413 + ABZR87_RS08475 0.38 +2.4
1,800,413 + ABZR87_RS08475 0.38 +1.5
1,800,413 + ABZR87_RS08475 0.38 -1.1
1,800,413 + ABZR87_RS08475 0.38 -0.1
1,800,413 + ABZR87_RS08475 0.38 -0.6
1,800,413 + ABZR87_RS08475 0.38 -0.8
1,800,414 - ABZR87_RS08475 0.38 +3.2
1,800,818 + ABZR87_RS08475 0.68 +1.5
1,800,819 - ABZR87_RS08475 0.69 -0.7
1,800,819 - ABZR87_RS08475 0.69 +2.8
1,800,819 - ABZR87_RS08475 0.69 +0.2
1,800,851 + ABZR87_RS08475 0.71 -0.3
1,800,851 + ABZR87_RS08475 0.71 -1.9
1,800,852 - ABZR87_RS08475 0.71 -1.8
1,800,911 + ABZR87_RS08475 0.76 -1.0
1,800,967 + ABZR87_RS08475 0.80 -2.2
1,800,968 - ABZR87_RS08475 0.80 -2.8
1,801,078 - ABZR87_RS08475 0.88 +3.1
1,801,078 - ABZR87_RS08475 0.88 +0.7
1,801,262 - +4.2
1,801,285 + +2.1
1,801,285 + -2.9
1,801,295 - +2.2
1,801,354 + -1.7
1,801,354 + -0.4
1,801,354 + +1.2
1,801,355 - +1.7
1,801,355 - +2.2
1,801,444 - ABZR87_RS08480 0.18 +1.9
1,801,465 + ABZR87_RS08480 0.20 -0.6
1,801,487 + ABZR87_RS08480 0.22 -2.1
1,801,488 - ABZR87_RS08480 0.22 +2.0
1,801,489 + ABZR87_RS08480 0.22 +1.0
1,801,535 + ABZR87_RS08480 0.27 -1.4
1,801,668 + ABZR87_RS08480 0.40 +1.5
1,801,668 + ABZR87_RS08480 0.40 +1.4
1,801,668 + ABZR87_RS08480 0.40 -0.1
1,801,668 + ABZR87_RS08480 0.40 -0.2
1,801,669 - ABZR87_RS08480 0.40 +0.9
1,801,669 - ABZR87_RS08480 0.40 -2.0
1,801,669 - ABZR87_RS08480 0.40 +1.6
1,801,672 + ABZR87_RS08480 0.40 -3.7
1,801,672 + ABZR87_RS08480 0.40 +1.8
1,801,672 + ABZR87_RS08480 0.40 +1.8
1,801,672 + ABZR87_RS08480 0.40 +1.3
1,801,673 - ABZR87_RS08480 0.40 +0.6
1,801,673 - ABZR87_RS08480 0.40 +0.3
1,801,717 + ABZR87_RS08480 0.45 -1.4
1,801,717 + ABZR87_RS08480 0.45 -0.8
1,801,718 - ABZR87_RS08480 0.45 -1.5
1,801,718 - ABZR87_RS08480 0.45 +1.8
1,801,987 + ABZR87_RS08480 0.71 -0.7
1,802,167 + ABZR87_RS08480 0.89 -1.9
1,802,167 + ABZR87_RS08480 0.89 +1.3
1,802,168 - ABZR87_RS08480 0.89 +0.2
1,802,168 - ABZR87_RS08480 0.89 -2.1
1,802,168 - ABZR87_RS08480 0.89 -2.0
1,802,168 - ABZR87_RS08480 0.89 -3.3
1,802,168 - ABZR87_RS08480 0.89 +0.2
1,802,168 - ABZR87_RS08480 0.89 +1.7
1,802,168 - ABZR87_RS08480 0.89 -1.5
1,802,168 - ABZR87_RS08480 0.89 -0.0
1,802,402 + ABZR87_RS08485 0.20 +0.2
1,802,403 - ABZR87_RS08485 0.20 +0.2
1,802,403 - ABZR87_RS08485 0.20 +0.9
1,802,403 - ABZR87_RS08485 0.20 +1.3
1,802,413 - ABZR87_RS08485 0.22 -0.3
1,802,413 - ABZR87_RS08485 0.22 +1.0
1,802,507 + ABZR87_RS08485 0.43 +0.6
1,802,507 + ABZR87_RS08485 0.43 +1.3
1,802,507 + ABZR87_RS08485 0.43 +1.3
1,802,508 - ABZR87_RS08485 0.43 +1.0
1,802,615 + ABZR87_RS08485 0.67 +2.1
1,802,615 + ABZR87_RS08485 0.67 +0.3
1,802,737 - +0.3
1,802,808 - +3.2
1,803,109 + ABZR87_RS08490 0.32 -0.4
1,803,110 - ABZR87_RS08490 0.32 +2.0
1,803,143 + ABZR87_RS08490 0.36 -2.2
1,803,144 - ABZR87_RS08490 0.36 -0.6

Or see this region's nucleotide sequence