Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07745

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07740 and ABZR87_RS07745 are separated by 86 nucleotidesABZR87_RS07745 and ABZR87_RS07750 overlap by 4 nucleotides ABZR87_RS07740: ABZR87_RS07740 - glycine--tRNA ligase subunit beta, at 1,640,063 to 1,642,156 _RS07740 ABZR87_RS07745: ABZR87_RS07745 - hypothetical protein, at 1,642,243 to 1,642,902 _RS07745 ABZR87_RS07750: ABZR87_RS07750 - glycine--tRNA ligase subunit alpha, at 1,642,899 to 1,643,885 _RS07750 Position (kb) 1642 1643Strain fitness (log2 ratio) -2 -1 0 1at 1642.219 kb on - strandat 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.434 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745at 1642.584 kb on - strand, within ABZR87_RS07745

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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1,642,219 - -1.1
1,642,434 - ABZR87_RS07745 0.29 -0.4
1,642,434 - ABZR87_RS07745 0.29 -2.6
1,642,434 - ABZR87_RS07745 0.29 +0.2
1,642,434 - ABZR87_RS07745 0.29 -2.4
1,642,434 - ABZR87_RS07745 0.29 -0.9
1,642,584 - ABZR87_RS07745 0.52 -0.3
1,642,584 - ABZR87_RS07745 0.52 -0.3
1,642,584 - ABZR87_RS07745 0.52 -2.1
1,642,584 - ABZR87_RS07745 0.52 -1.4
1,642,584 - ABZR87_RS07745 0.52 +0.8

Or see this region's nucleotide sequence