Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06515 and ABZR87_RS06520 overlap by 4 nucleotides ABZR87_RS06520 and ABZR87_RS06525 overlap by 1 nucleotides ABZR87_RS06525 and ABZR87_RS06530 are separated by 9 nucleotides
ABZR87_RS06515: ABZR87_RS06515 - ABC transporter permease, at 1,386,406 to 1,387,530
_RS06515
ABZR87_RS06520: ABZR87_RS06520 - ABC transporter ATP-binding protein, at 1,387,527 to 1,388,408
_RS06520
ABZR87_RS06525: ABZR87_RS06525 - MlaD family protein, at 1,388,408 to 1,389,376
_RS06525
ABZR87_RS06530: ABZR87_RS06530 - ABC-type transport auxiliary lipoprotein family protein, at 1,389,386 to 1,390,060
_RS06530
Position (kb)
1387
1388
1389 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.889 kb on + strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.890 kb on - strand, within ABZR87_RS06515 at 1386.902 kb on - strand, within ABZR87_RS06515 at 1386.958 kb on + strand, within ABZR87_RS06515 at 1386.958 kb on + strand, within ABZR87_RS06515 at 1386.959 kb on - strand, within ABZR87_RS06515 at 1387.011 kb on + strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515 at 1387.012 kb on - strand, within ABZR87_RS06515 at 1387.254 kb on + strand, within ABZR87_RS06515 at 1387.255 kb on - strand, within ABZR87_RS06515 at 1387.282 kb on - strand, within ABZR87_RS06515 at 1387.294 kb on + strand, within ABZR87_RS06515 at 1387.294 kb on + strand, within ABZR87_RS06515 at 1387.294 kb on + strand, within ABZR87_RS06515 at 1387.294 kb on + strand, within ABZR87_RS06515 at 1387.295 kb on - strand, within ABZR87_RS06515 at 1387.295 kb on - strand, within ABZR87_RS06515 at 1387.295 kb on - strand, within ABZR87_RS06515 at 1387.295 kb on - strand, within ABZR87_RS06515 at 1387.295 kb on - strand, within ABZR87_RS06515 at 1387.295 kb on - strand, within ABZR87_RS06515 at 1387.463 kb on + strand at 1387.463 kb on + strand at 1387.526 kb on + strand at 1387.527 kb on - strand at 1387.632 kb on + strand, within ABZR87_RS06520 at 1388.130 kb on + strand, within ABZR87_RS06520 at 1388.130 kb on + strand, within ABZR87_RS06520 at 1388.130 kb on + strand, within ABZR87_RS06520 at 1388.131 kb on - strand, within ABZR87_RS06520 at 1388.131 kb on - strand, within ABZR87_RS06520 at 1388.310 kb on + strand, within ABZR87_RS06520 at 1388.311 kb on - strand, within ABZR87_RS06520 at 1388.311 kb on - strand, within ABZR87_RS06520 at 1388.311 kb on - strand, within ABZR87_RS06520 at 1388.311 kb on - strand, within ABZR87_RS06520 at 1388.447 kb on - strand at 1388.447 kb on - strand at 1388.519 kb on + strand, within ABZR87_RS06525 at 1388.577 kb on - strand, within ABZR87_RS06525 at 1388.577 kb on - strand, within ABZR87_RS06525 at 1388.623 kb on + strand, within ABZR87_RS06525 at 1388.623 kb on + strand, within ABZR87_RS06525 at 1388.623 kb on + strand, within ABZR87_RS06525 at 1388.623 kb on + strand, within ABZR87_RS06525 at 1388.624 kb on - strand, within ABZR87_RS06525 at 1388.624 kb on - strand, within ABZR87_RS06525 at 1388.624 kb on - strand, within ABZR87_RS06525 at 1388.624 kb on - strand, within ABZR87_RS06525 at 1388.690 kb on + strand, within ABZR87_RS06525 at 1388.690 kb on + strand, within ABZR87_RS06525 at 1388.690 kb on + strand, within ABZR87_RS06525 at 1388.690 kb on + strand, within ABZR87_RS06525 at 1388.690 kb on + strand, within ABZR87_RS06525 at 1388.691 kb on - strand, within ABZR87_RS06525 at 1388.691 kb on - strand, within ABZR87_RS06525 at 1388.691 kb on - strand, within ABZR87_RS06525 at 1388.691 kb on - strand, within ABZR87_RS06525 at 1388.705 kb on + strand, within ABZR87_RS06525 at 1388.729 kb on + strand, within ABZR87_RS06525 at 1388.729 kb on + strand, within ABZR87_RS06525 at 1388.729 kb on + strand, within ABZR87_RS06525 at 1388.729 kb on + strand, within ABZR87_RS06525 at 1388.730 kb on - strand, within ABZR87_RS06525 at 1388.730 kb on - strand, within ABZR87_RS06525 at 1388.730 kb on - strand, within ABZR87_RS06525 at 1388.730 kb on - strand, within ABZR87_RS06525 at 1388.981 kb on + strand, within ABZR87_RS06525 at 1388.981 kb on + strand, within ABZR87_RS06525 at 1388.982 kb on - strand, within ABZR87_RS06525 at 1388.982 kb on - strand, within ABZR87_RS06525 at 1388.982 kb on - strand, within ABZR87_RS06525 at 1389.189 kb on - strand, within ABZR87_RS06525 at 1389.340 kb on + strand at 1389.340 kb on + strand at 1389.340 kb on + strand at 1389.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 1,386,889 + ABZR87_RS06515 0.43 -2.0 1,386,889 + ABZR87_RS06515 0.43 -2.0 1,386,889 + ABZR87_RS06515 0.43 +0.0 1,386,889 + ABZR87_RS06515 0.43 -2.6 1,386,890 - ABZR87_RS06515 0.43 +1.4 1,386,890 - ABZR87_RS06515 0.43 -3.6 1,386,890 - ABZR87_RS06515 0.43 -0.5 1,386,890 - ABZR87_RS06515 0.43 +1.5 1,386,902 - ABZR87_RS06515 0.44 -1.8 1,386,958 + ABZR87_RS06515 0.49 -1.9 1,386,958 + ABZR87_RS06515 0.49 -0.4 1,386,959 - ABZR87_RS06515 0.49 -0.5 1,387,011 + ABZR87_RS06515 0.54 -0.4 1,387,012 - ABZR87_RS06515 0.54 -1.8 1,387,012 - ABZR87_RS06515 0.54 -0.2 1,387,012 - ABZR87_RS06515 0.54 -2.2 1,387,012 - ABZR87_RS06515 0.54 -2.5 1,387,254 + ABZR87_RS06515 0.75 -0.4 1,387,255 - ABZR87_RS06515 0.75 -2.1 1,387,282 - ABZR87_RS06515 0.78 -2.1 1,387,294 + ABZR87_RS06515 0.79 +0.1 1,387,294 + ABZR87_RS06515 0.79 -1.2 1,387,294 + ABZR87_RS06515 0.79 +0.0 1,387,294 + ABZR87_RS06515 0.79 -1.6 1,387,295 - ABZR87_RS06515 0.79 -2.1 1,387,295 - ABZR87_RS06515 0.79 -2.2 1,387,295 - ABZR87_RS06515 0.79 -0.2 1,387,295 - ABZR87_RS06515 0.79 +1.9 1,387,295 - ABZR87_RS06515 0.79 -1.2 1,387,295 - ABZR87_RS06515 0.79 -1.4 1,387,463 + -0.4 1,387,463 + -1.6 1,387,526 + -3.5 1,387,527 - -0.9 1,387,632 + ABZR87_RS06520 0.12 -2.1 1,388,130 + ABZR87_RS06520 0.68 +0.7 1,388,130 + ABZR87_RS06520 0.68 -3.1 1,388,130 + ABZR87_RS06520 0.68 -2.6 1,388,131 - ABZR87_RS06520 0.68 -2.1 1,388,131 - ABZR87_RS06520 0.68 -2.8 1,388,310 + ABZR87_RS06520 0.89 +0.4 1,388,311 - ABZR87_RS06520 0.89 -3.9 1,388,311 - ABZR87_RS06520 0.89 -1.1 1,388,311 - ABZR87_RS06520 0.89 -0.5 1,388,311 - ABZR87_RS06520 0.89 +1.3 1,388,447 - -1.1 1,388,447 - -0.0 1,388,519 + ABZR87_RS06525 0.11 +1.1 1,388,577 - ABZR87_RS06525 0.17 -0.8 1,388,577 - ABZR87_RS06525 0.17 +1.4 1,388,623 + ABZR87_RS06525 0.22 +0.3 1,388,623 + ABZR87_RS06525 0.22 +0.5 1,388,623 + ABZR87_RS06525 0.22 +0.8 1,388,623 + ABZR87_RS06525 0.22 -1.5 1,388,624 - ABZR87_RS06525 0.22 +0.4 1,388,624 - ABZR87_RS06525 0.22 -0.1 1,388,624 - ABZR87_RS06525 0.22 -1.8 1,388,624 - ABZR87_RS06525 0.22 -0.9 1,388,690 + ABZR87_RS06525 0.29 +0.8 1,388,690 + ABZR87_RS06525 0.29 -0.5 1,388,690 + ABZR87_RS06525 0.29 +0.3 1,388,690 + ABZR87_RS06525 0.29 +0.0 1,388,690 + ABZR87_RS06525 0.29 -0.7 1,388,691 - ABZR87_RS06525 0.29 +2.7 1,388,691 - ABZR87_RS06525 0.29 +0.5 1,388,691 - ABZR87_RS06525 0.29 +1.7 1,388,691 - ABZR87_RS06525 0.29 +0.1 1,388,705 + ABZR87_RS06525 0.31 -1.0 1,388,729 + ABZR87_RS06525 0.33 -0.7 1,388,729 + ABZR87_RS06525 0.33 -1.1 1,388,729 + ABZR87_RS06525 0.33 -3.1 1,388,729 + ABZR87_RS06525 0.33 +1.7 1,388,730 - ABZR87_RS06525 0.33 -0.7 1,388,730 - ABZR87_RS06525 0.33 -2.5 1,388,730 - ABZR87_RS06525 0.33 +0.6 1,388,730 - ABZR87_RS06525 0.33 +0.3 1,388,981 + ABZR87_RS06525 0.59 -2.4 1,388,981 + ABZR87_RS06525 0.59 +0.3 1,388,982 - ABZR87_RS06525 0.59 -2.5 1,388,982 - ABZR87_RS06525 0.59 -1.0 1,388,982 - ABZR87_RS06525 0.59 +0.8 1,389,189 - ABZR87_RS06525 0.81 +1.1 1,389,340 + -0.5 1,389,340 + -0.7 1,389,340 + -0.1 1,389,341 - +0.4
Or see this region's nucleotide sequence