Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04140

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04135 and ABZR87_RS04140 are separated by 75 nucleotidesABZR87_RS04140 and ABZR87_RS04145 are separated by 155 nucleotidesABZR87_RS04145 and ABZR87_RS04150 are separated by 107 nucleotides ABZR87_RS04135: ABZR87_RS04135 - aldo/keto reductase, at 867,326 to 868,339 _RS04135 ABZR87_RS04140: ABZR87_RS04140 - ABC transporter substrate-binding protein, at 868,415 to 869,563 _RS04140 ABZR87_RS04145: ABZR87_RS04145 - short chain dehydrogenase, at 869,719 to 870,324 _RS04145 ABZR87_RS04150: ABZR87_RS04150 - LysR family transcriptional regulator CrgA, at 870,432 to 871,340 _RS04150 Position (kb) 868 869 870Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.575 kb on + strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.576 kb on - strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.702 kb on + strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.703 kb on - strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.704 kb on + strand, within ABZR87_RS04135at 867.705 kb on - strand, within ABZR87_RS04135at 867.705 kb on - strand, within ABZR87_RS04135at 867.808 kb on + strand, within ABZR87_RS04135at 867.808 kb on + strand, within ABZR87_RS04135at 867.887 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.929 kb on + strand, within ABZR87_RS04135at 867.930 kb on - strand, within ABZR87_RS04135at 867.962 kb on + strand, within ABZR87_RS04135at 867.963 kb on - strand, within ABZR87_RS04135at 867.963 kb on - strand, within ABZR87_RS04135at 868.408 kb on + strandat 868.408 kb on + strandat 868.408 kb on + strandat 868.409 kb on - strandat 868.409 kb on - strandat 868.409 kb on - strandat 868.501 kb on + strandat 868.501 kb on + strandat 868.501 kb on + strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.502 kb on - strandat 868.677 kb on + strand, within ABZR87_RS04140at 868.677 kb on + strand, within ABZR87_RS04140at 868.678 kb on - strand, within ABZR87_RS04140at 868.678 kb on - strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.689 kb on + strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.690 kb on - strand, within ABZR87_RS04140at 868.701 kb on + strand, within ABZR87_RS04140at 868.701 kb on + strand, within ABZR87_RS04140at 868.701 kb on + strand, within ABZR87_RS04140at 868.702 kb on - strand, within ABZR87_RS04140at 868.842 kb on + strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.843 kb on - strand, within ABZR87_RS04140at 868.857 kb on + strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.858 kb on - strand, within ABZR87_RS04140at 868.900 kb on + strand, within ABZR87_RS04140at 868.900 kb on + strand, within ABZR87_RS04140at 868.901 kb on - strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.972 kb on + strand, within ABZR87_RS04140at 868.973 kb on - strand, within ABZR87_RS04140at 869.061 kb on + strand, within ABZR87_RS04140at 869.061 kb on + strand, within ABZR87_RS04140at 869.061 kb on + strand, within ABZR87_RS04140at 869.062 kb on - strand, within ABZR87_RS04140at 869.062 kb on - strand, within ABZR87_RS04140at 869.096 kb on + strand, within ABZR87_RS04140at 869.096 kb on + strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.097 kb on - strand, within ABZR87_RS04140at 869.379 kb on + strand, within ABZR87_RS04140at 869.379 kb on + strand, within ABZR87_RS04140at 869.379 kb on + strand, within ABZR87_RS04140at 869.379 kb on + strand, within ABZR87_RS04140at 869.379 kb on + strand, within ABZR87_RS04140at 869.379 kb on + strand, within ABZR87_RS04140at 869.379 kb on + strand, within ABZR87_RS04140at 869.380 kb on - strand, within ABZR87_RS04140at 869.555 kb on + strandat 869.578 kb on + strandat 869.578 kb on + strandat 869.578 kb on + strandat 869.578 kb on + strandat 869.578 kb on + strandat 869.579 kb on - strandat 869.579 kb on - strandat 869.579 kb on - strandat 869.579 kb on - strandat 869.579 kb on - strandat 869.579 kb on - strandat 869.648 kb on + strandat 869.648 kb on + strandat 869.648 kb on + strandat 869.649 kb on - strandat 869.649 kb on - strandat 869.649 kb on - strandat 869.649 kb on - strandat 869.683 kb on - strandat 869.732 kb on + strandat 869.732 kb on + strandat 869.732 kb on + strandat 869.733 kb on - strandat 869.828 kb on + strand, within ABZR87_RS04145at 869.828 kb on + strand, within ABZR87_RS04145at 869.828 kb on + strand, within ABZR87_RS04145at 869.828 kb on + strand, within ABZR87_RS04145at 869.828 kb on + strand, within ABZR87_RS04145at 869.828 kb on + strand, within ABZR87_RS04145at 869.828 kb on + strand, within ABZR87_RS04145at 869.829 kb on - strand, within ABZR87_RS04145at 869.829 kb on - strand, within ABZR87_RS04145at 869.829 kb on - strand, within ABZR87_RS04145at 869.829 kb on - strand, within ABZR87_RS04145at 869.829 kb on - strand, within ABZR87_RS04145at 870.020 kb on + strand, within ABZR87_RS04145at 870.020 kb on + strand, within ABZR87_RS04145at 870.020 kb on + strand, within ABZR87_RS04145at 870.020 kb on + strand, within ABZR87_RS04145at 870.021 kb on - strand, within ABZR87_RS04145at 870.021 kb on - strand, within ABZR87_RS04145at 870.021 kb on - strand, within ABZR87_RS04145at 870.021 kb on - strand, within ABZR87_RS04145at 870.021 kb on - strand, within ABZR87_RS04145at 870.252 kb on + strand, within ABZR87_RS04145at 870.253 kb on - strand, within ABZR87_RS04145at 870.253 kb on - strand, within ABZR87_RS04145at 870.362 kb on - strandat 870.388 kb on - strandat 870.398 kb on + strandat 870.399 kb on - strandat 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.537 kb on + strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150at 870.538 kb on - strand, within ABZR87_RS04150

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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867,575 + ABZR87_RS04135 0.25 -3.3
867,575 + ABZR87_RS04135 0.25 +2.1
867,575 + ABZR87_RS04135 0.25 +1.5
867,575 + ABZR87_RS04135 0.25 -1.1
867,575 + ABZR87_RS04135 0.25 +1.0
867,575 + ABZR87_RS04135 0.25 +0.8
867,575 + ABZR87_RS04135 0.25 -3.9
867,576 - ABZR87_RS04135 0.25 -1.8
867,576 - ABZR87_RS04135 0.25 -1.9
867,576 - ABZR87_RS04135 0.25 -1.1
867,576 - ABZR87_RS04135 0.25 -1.7
867,576 - ABZR87_RS04135 0.25 +0.2
867,702 + ABZR87_RS04135 0.37 -1.9
867,702 + ABZR87_RS04135 0.37 -1.1
867,702 + ABZR87_RS04135 0.37 -1.7
867,702 + ABZR87_RS04135 0.37 -0.4
867,703 - ABZR87_RS04135 0.37 +0.7
867,703 - ABZR87_RS04135 0.37 -2.1
867,703 - ABZR87_RS04135 0.37 -0.6
867,703 - ABZR87_RS04135 0.37 +1.2
867,703 - ABZR87_RS04135 0.37 -0.8
867,703 - ABZR87_RS04135 0.37 +0.5
867,704 + ABZR87_RS04135 0.37 +1.0
867,704 + ABZR87_RS04135 0.37 +0.9
867,704 + ABZR87_RS04135 0.37 +4.1
867,704 + ABZR87_RS04135 0.37 +2.6
867,704 + ABZR87_RS04135 0.37 +0.6
867,705 - ABZR87_RS04135 0.37 +0.4
867,705 - ABZR87_RS04135 0.37 +1.1
867,808 + ABZR87_RS04135 0.48 -1.9
867,808 + ABZR87_RS04135 0.48 -2.6
867,887 + ABZR87_RS04135 0.55 +1.9
867,929 + ABZR87_RS04135 0.59 +1.9
867,929 + ABZR87_RS04135 0.59 -1.9
867,929 + ABZR87_RS04135 0.59 -1.1
867,929 + ABZR87_RS04135 0.59 +1.5
867,930 - ABZR87_RS04135 0.60 -2.3
867,962 + ABZR87_RS04135 0.63 +1.6
867,963 - ABZR87_RS04135 0.63 +1.3
867,963 - ABZR87_RS04135 0.63 +1.2
868,408 + +1.0
868,408 + +1.0
868,408 + +0.5
868,409 - +2.5
868,409 - +0.9
868,409 - -1.8
868,501 + +0.3
868,501 + +0.5
868,501 + -2.3
868,502 - +0.1
868,502 - -1.5
868,502 - -1.4
868,502 - +1.0
868,502 - +0.2
868,677 + ABZR87_RS04140 0.23 +0.5
868,677 + ABZR87_RS04140 0.23 +1.1
868,678 - ABZR87_RS04140 0.23 -1.3
868,678 - ABZR87_RS04140 0.23 -2.6
868,689 + ABZR87_RS04140 0.24 -2.6
868,689 + ABZR87_RS04140 0.24 -2.8
868,689 + ABZR87_RS04140 0.24 +2.8
868,689 + ABZR87_RS04140 0.24 -0.5
868,689 + ABZR87_RS04140 0.24 +0.4
868,689 + ABZR87_RS04140 0.24 -3.4
868,689 + ABZR87_RS04140 0.24 +0.6
868,689 + ABZR87_RS04140 0.24 +0.8
868,689 + ABZR87_RS04140 0.24 +1.9
868,690 - ABZR87_RS04140 0.24 +0.7
868,690 - ABZR87_RS04140 0.24 +0.9
868,690 - ABZR87_RS04140 0.24 +0.3
868,690 - ABZR87_RS04140 0.24 +0.4
868,690 - ABZR87_RS04140 0.24 -0.3
868,701 + ABZR87_RS04140 0.25 +1.3
868,701 + ABZR87_RS04140 0.25 +1.6
868,701 + ABZR87_RS04140 0.25 +2.5
868,702 - ABZR87_RS04140 0.25 +1.6
868,842 + ABZR87_RS04140 0.37 +1.2
868,843 - ABZR87_RS04140 0.37 -1.1
868,843 - ABZR87_RS04140 0.37 -3.0
868,843 - ABZR87_RS04140 0.37 +1.8
868,843 - ABZR87_RS04140 0.37 -1.9
868,843 - ABZR87_RS04140 0.37 +1.7
868,857 + ABZR87_RS04140 0.38 +1.8
868,858 - ABZR87_RS04140 0.39 +0.5
868,858 - ABZR87_RS04140 0.39 -1.4
868,858 - ABZR87_RS04140 0.39 -2.3
868,858 - ABZR87_RS04140 0.39 -0.1
868,900 + ABZR87_RS04140 0.42 +0.7
868,900 + ABZR87_RS04140 0.42 +3.1
868,901 - ABZR87_RS04140 0.42 -2.2
868,972 + ABZR87_RS04140 0.48 +1.2
868,972 + ABZR87_RS04140 0.48 -3.7
868,972 + ABZR87_RS04140 0.48 +2.4
868,972 + ABZR87_RS04140 0.48 -0.1
868,973 - ABZR87_RS04140 0.49 +1.5
869,061 + ABZR87_RS04140 0.56 -1.4
869,061 + ABZR87_RS04140 0.56 -3.3
869,061 + ABZR87_RS04140 0.56 +2.2
869,062 - ABZR87_RS04140 0.56 -1.3
869,062 - ABZR87_RS04140 0.56 +0.8
869,096 + ABZR87_RS04140 0.59 -1.3
869,096 + ABZR87_RS04140 0.59 -0.3
869,097 - ABZR87_RS04140 0.59 -2.4
869,097 - ABZR87_RS04140 0.59 -0.4
869,097 - ABZR87_RS04140 0.59 -2.4
869,097 - ABZR87_RS04140 0.59 -0.6
869,097 - ABZR87_RS04140 0.59 +0.3
869,379 + ABZR87_RS04140 0.84 +1.3
869,379 + ABZR87_RS04140 0.84 -1.9
869,379 + ABZR87_RS04140 0.84 -0.5
869,379 + ABZR87_RS04140 0.84 -1.1
869,379 + ABZR87_RS04140 0.84 +0.9
869,379 + ABZR87_RS04140 0.84 -2.6
869,379 + ABZR87_RS04140 0.84 +0.2
869,380 - ABZR87_RS04140 0.84 -0.5
869,555 + -0.3
869,578 + -0.8
869,578 + -1.1
869,578 + -3.7
869,578 + +2.2
869,578 + -1.0
869,579 - +1.2
869,579 - -2.9
869,579 - +0.7
869,579 - -1.0
869,579 - -0.7
869,579 - -2.3
869,648 + +0.6
869,648 + +1.6
869,648 + +0.2
869,649 - +1.3
869,649 - -2.3
869,649 - -3.3
869,649 - +0.9
869,683 - -1.3
869,732 + -2.7
869,732 + -0.2
869,732 + +0.5
869,733 - -0.4
869,828 + ABZR87_RS04145 0.18 +1.3
869,828 + ABZR87_RS04145 0.18 -2.0
869,828 + ABZR87_RS04145 0.18 -1.3
869,828 + ABZR87_RS04145 0.18 -3.1
869,828 + ABZR87_RS04145 0.18 -2.1
869,828 + ABZR87_RS04145 0.18 -0.7
869,828 + ABZR87_RS04145 0.18 +2.2
869,829 - ABZR87_RS04145 0.18 +0.7
869,829 - ABZR87_RS04145 0.18 -0.0
869,829 - ABZR87_RS04145 0.18 +0.8
869,829 - ABZR87_RS04145 0.18 +1.4
869,829 - ABZR87_RS04145 0.18 -2.7
870,020 + ABZR87_RS04145 0.50 +1.8
870,020 + ABZR87_RS04145 0.50 -2.0
870,020 + ABZR87_RS04145 0.50 +1.5
870,020 + ABZR87_RS04145 0.50 -0.5
870,021 - ABZR87_RS04145 0.50 -0.4
870,021 - ABZR87_RS04145 0.50 +0.2
870,021 - ABZR87_RS04145 0.50 -0.0
870,021 - ABZR87_RS04145 0.50 +1.2
870,021 - ABZR87_RS04145 0.50 +1.5
870,252 + ABZR87_RS04145 0.88 -2.2
870,253 - ABZR87_RS04145 0.88 -1.9
870,253 - ABZR87_RS04145 0.88 +0.8
870,362 - -0.5
870,388 - -2.3
870,398 + -2.2
870,399 - +1.8
870,537 + ABZR87_RS04150 0.12 +1.2
870,537 + ABZR87_RS04150 0.12 +1.2
870,537 + ABZR87_RS04150 0.12 +0.4
870,537 + ABZR87_RS04150 0.12 +0.1
870,537 + ABZR87_RS04150 0.12 +0.4
870,537 + ABZR87_RS04150 0.12 -3.2
870,537 + ABZR87_RS04150 0.12 +1.2
870,537 + ABZR87_RS04150 0.12 +1.6
870,537 + ABZR87_RS04150 0.12 +0.8
870,537 + ABZR87_RS04150 0.12 -0.8
870,538 - ABZR87_RS04150 0.12 -0.3
870,538 - ABZR87_RS04150 0.12 -2.5
870,538 - ABZR87_RS04150 0.12 +1.2
870,538 - ABZR87_RS04150 0.12 +0.2
870,538 - ABZR87_RS04150 0.12 -0.4
870,538 - ABZR87_RS04150 0.12 +1.8
870,538 - ABZR87_RS04150 0.12 -1.3

Or see this region's nucleotide sequence