Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03895

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03890 and ABZR87_RS03895 are separated by 622 nucleotidesABZR87_RS03895 and ABZR87_RS03900 are separated by 65 nucleotides ABZR87_RS03890: ABZR87_RS03890 - hydroxypyruvate isomerase, at 803,237 to 804,019 _RS03890 ABZR87_RS03895: ABZR87_RS03895 - 2-hydroxy-3-oxopropionate reductase, at 804,642 to 805,553 _RS03895 ABZR87_RS03900: ABZR87_RS03900 - glycerate kinase, at 805,619 to 806,938 _RS03900 Position (kb) 804 805 806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 803.696 kb on + strand, within ABZR87_RS03890at 803.697 kb on - strand, within ABZR87_RS03890at 803.697 kb on - strand, within ABZR87_RS03890at 803.697 kb on - strand, within ABZR87_RS03890at 803.756 kb on + strand, within ABZR87_RS03890at 803.757 kb on - strand, within ABZR87_RS03890at 803.765 kb on + strand, within ABZR87_RS03890at 803.765 kb on + strand, within ABZR87_RS03890at 803.765 kb on + strand, within ABZR87_RS03890at 803.766 kb on - strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.774 kb on + strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.775 kb on - strand, within ABZR87_RS03890at 803.806 kb on + strand, within ABZR87_RS03890at 803.807 kb on - strand, within ABZR87_RS03890at 803.897 kb on + strand, within ABZR87_RS03890at 803.897 kb on + strand, within ABZR87_RS03890at 803.933 kb on + strand, within ABZR87_RS03890at 803.934 kb on - strand, within ABZR87_RS03890at 803.957 kb on + strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.958 kb on - strandat 803.965 kb on + strandat 803.966 kb on - strandat 803.966 kb on - strandat 803.966 kb on - strandat 804.252 kb on + strandat 804.252 kb on + strandat 804.252 kb on + strandat 804.352 kb on - strandat 804.352 kb on - strandat 804.352 kb on - strandat 804.352 kb on - strandat 804.352 kb on - strandat 804.352 kb on - strandat 804.352 kb on - strandat 804.410 kb on + strandat 804.410 kb on + strandat 804.827 kb on + strand, within ABZR87_RS03895at 804.827 kb on + strand, within ABZR87_RS03895at 804.827 kb on + strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 804.828 kb on - strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.014 kb on + strand, within ABZR87_RS03895at 805.015 kb on - strand, within ABZR87_RS03895at 805.015 kb on - strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.346 kb on + strand, within ABZR87_RS03895at 805.347 kb on - strand, within ABZR87_RS03895at 805.347 kb on - strand, within ABZR87_RS03895at 805.347 kb on - strand, within ABZR87_RS03895at 805.544 kb on + strandat 805.551 kb on + strandat 805.551 kb on + strandat 805.551 kb on + strandat 805.551 kb on + strandat 805.552 kb on - strandat 805.552 kb on - strandat 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.319 kb on - strand, within ABZR87_RS03900at 806.480 kb on + strand, within ABZR87_RS03900

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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803,696 + ABZR87_RS03890 0.59 +1.3
803,697 - ABZR87_RS03890 0.59 -0.7
803,697 - ABZR87_RS03890 0.59 -1.6
803,697 - ABZR87_RS03890 0.59 -0.4
803,756 + ABZR87_RS03890 0.66 +0.8
803,757 - ABZR87_RS03890 0.66 +2.2
803,765 + ABZR87_RS03890 0.67 -3.3
803,765 + ABZR87_RS03890 0.67 +3.7
803,765 + ABZR87_RS03890 0.67 +1.2
803,766 - ABZR87_RS03890 0.68 +1.2
803,774 + ABZR87_RS03890 0.69 +2.6
803,774 + ABZR87_RS03890 0.69 +1.7
803,774 + ABZR87_RS03890 0.69 +2.2
803,774 + ABZR87_RS03890 0.69 +1.1
803,775 - ABZR87_RS03890 0.69 -0.2
803,775 - ABZR87_RS03890 0.69 +0.9
803,775 - ABZR87_RS03890 0.69 +1.1
803,775 - ABZR87_RS03890 0.69 +0.6
803,775 - ABZR87_RS03890 0.69 +1.8
803,775 - ABZR87_RS03890 0.69 +0.2
803,775 - ABZR87_RS03890 0.69 +1.4
803,775 - ABZR87_RS03890 0.69 +0.2
803,775 - ABZR87_RS03890 0.69 -2.7
803,806 + ABZR87_RS03890 0.73 -0.6
803,807 - ABZR87_RS03890 0.73 +0.5
803,897 + ABZR87_RS03890 0.84 +1.4
803,897 + ABZR87_RS03890 0.84 -3.9
803,933 + ABZR87_RS03890 0.89 -0.4
803,934 - ABZR87_RS03890 0.89 +0.4
803,957 + -1.0
803,958 - +1.6
803,958 - +1.5
803,958 - -2.4
803,958 - +1.2
803,958 - +0.8
803,958 - +1.0
803,965 + +1.6
803,966 - -3.3
803,966 - +1.0
803,966 - -3.4
804,252 + +0.6
804,252 + +1.4
804,252 + -2.6
804,352 - -1.0
804,352 - -1.9
804,352 - +1.2
804,352 - +1.7
804,352 - +2.0
804,352 - -2.0
804,352 - +0.5
804,410 + +1.9
804,410 + -1.6
804,827 + ABZR87_RS03895 0.20 +0.3
804,827 + ABZR87_RS03895 0.20 -0.1
804,827 + ABZR87_RS03895 0.20 +0.4
804,828 - ABZR87_RS03895 0.20 +0.3
804,828 - ABZR87_RS03895 0.20 +2.0
804,828 - ABZR87_RS03895 0.20 -1.3
804,828 - ABZR87_RS03895 0.20 -1.4
804,828 - ABZR87_RS03895 0.20 -0.3
804,828 - ABZR87_RS03895 0.20 -0.8
804,828 - ABZR87_RS03895 0.20 -1.2
804,828 - ABZR87_RS03895 0.20 -0.3
804,828 - ABZR87_RS03895 0.20 +2.2
805,014 + ABZR87_RS03895 0.41 +0.5
805,014 + ABZR87_RS03895 0.41 +1.2
805,014 + ABZR87_RS03895 0.41 +0.6
805,014 + ABZR87_RS03895 0.41 -1.5
805,015 - ABZR87_RS03895 0.41 +1.3
805,015 - ABZR87_RS03895 0.41 -0.5
805,346 + ABZR87_RS03895 0.77 +1.0
805,346 + ABZR87_RS03895 0.77 -1.5
805,346 + ABZR87_RS03895 0.77 -2.0
805,346 + ABZR87_RS03895 0.77 -0.2
805,346 + ABZR87_RS03895 0.77 -0.3
805,346 + ABZR87_RS03895 0.77 -0.4
805,346 + ABZR87_RS03895 0.77 +2.3
805,346 + ABZR87_RS03895 0.77 +0.4
805,347 - ABZR87_RS03895 0.77 +3.4
805,347 - ABZR87_RS03895 0.77 -1.4
805,347 - ABZR87_RS03895 0.77 -0.6
805,544 + +2.0
805,551 + +0.8
805,551 + +0.5
805,551 + -1.0
805,551 + +0.2
805,552 - -0.4
805,552 - -0.6
806,319 - ABZR87_RS03900 0.53 +2.1
806,319 - ABZR87_RS03900 0.53 +0.4
806,319 - ABZR87_RS03900 0.53 -1.2
806,319 - ABZR87_RS03900 0.53 +1.0
806,319 - ABZR87_RS03900 0.53 +0.2
806,319 - ABZR87_RS03900 0.53 +1.5
806,319 - ABZR87_RS03900 0.53 +3.7
806,480 + ABZR87_RS03900 0.65 +0.3

Or see this region's nucleotide sequence