Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03155

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03150 and ABZR87_RS03155 are separated by 280 nucleotidesABZR87_RS03155 and ABZR87_RS03160 are separated by 66 nucleotides ABZR87_RS03150: ABZR87_RS03150 - porin, at 661,608 to 662,654 _RS03150 ABZR87_RS03155: ABZR87_RS03155 - mechanosensitive ion channel family protein, at 662,935 to 665,208 _RS03155 ABZR87_RS03160: ABZR87_RS03160 - MFS transporter, at 665,275 to 666,528 _RS03160 Position (kb) 662 663 664 665 666Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 661.968 kb on + strand, within ABZR87_RS03150at 661.968 kb on + strand, within ABZR87_RS03150at 661.968 kb on + strand, within ABZR87_RS03150at 661.968 kb on + strand, within ABZR87_RS03150at 661.968 kb on + strand, within ABZR87_RS03150at 661.968 kb on + strand, within ABZR87_RS03150at 661.968 kb on + strand, within ABZR87_RS03150at 661.968 kb on + strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 661.969 kb on - strand, within ABZR87_RS03150at 662.130 kb on + strand, within ABZR87_RS03150at 662.130 kb on + strand, within ABZR87_RS03150at 662.130 kb on + strand, within ABZR87_RS03150at 662.130 kb on + strand, within ABZR87_RS03150at 662.130 kb on + strand, within ABZR87_RS03150at 662.130 kb on + strand, within ABZR87_RS03150at 662.130 kb on + strand, within ABZR87_RS03150at 662.131 kb on - strand, within ABZR87_RS03150at 662.131 kb on - strand, within ABZR87_RS03150at 662.131 kb on - strand, within ABZR87_RS03150at 662.131 kb on - strand, within ABZR87_RS03150at 662.211 kb on + strand, within ABZR87_RS03150at 662.211 kb on + strand, within ABZR87_RS03150at 662.211 kb on + strand, within ABZR87_RS03150at 662.211 kb on + strand, within ABZR87_RS03150at 662.211 kb on + strand, within ABZR87_RS03150at 662.211 kb on + strand, within ABZR87_RS03150at 662.211 kb on + strand, within ABZR87_RS03150at 662.212 kb on - strand, within ABZR87_RS03150at 662.212 kb on - strand, within ABZR87_RS03150at 662.212 kb on - strand, within ABZR87_RS03150at 662.232 kb on + strand, within ABZR87_RS03150at 662.232 kb on + strand, within ABZR87_RS03150at 662.233 kb on - strand, within ABZR87_RS03150at 662.233 kb on - strand, within ABZR87_RS03150at 662.358 kb on + strand, within ABZR87_RS03150at 662.358 kb on + strand, within ABZR87_RS03150at 662.359 kb on - strand, within ABZR87_RS03150at 662.359 kb on - strand, within ABZR87_RS03150at 662.359 kb on - strand, within ABZR87_RS03150at 662.359 kb on - strand, within ABZR87_RS03150at 662.359 kb on - strand, within ABZR87_RS03150at 662.367 kb on + strand, within ABZR87_RS03150at 662.436 kb on + strand, within ABZR87_RS03150at 662.436 kb on + strand, within ABZR87_RS03150at 662.436 kb on + strand, within ABZR87_RS03150at 662.436 kb on + strand, within ABZR87_RS03150at 662.437 kb on - strand, within ABZR87_RS03150at 662.437 kb on - strand, within ABZR87_RS03150at 662.437 kb on - strand, within ABZR87_RS03150at 662.437 kb on - strand, within ABZR87_RS03150at 662.437 kb on - strand, within ABZR87_RS03150at 662.437 kb on - strand, within ABZR87_RS03150at 662.437 kb on - strand, within ABZR87_RS03150at 662.493 kb on + strand, within ABZR87_RS03150at 662.494 kb on - strand, within ABZR87_RS03150at 662.494 kb on - strand, within ABZR87_RS03150at 662.494 kb on - strand, within ABZR87_RS03150at 662.503 kb on - strand, within ABZR87_RS03150at 662.517 kb on + strand, within ABZR87_RS03150at 662.517 kb on + strand, within ABZR87_RS03150at 662.517 kb on + strand, within ABZR87_RS03150at 662.517 kb on + strand, within ABZR87_RS03150at 662.517 kb on + strand, within ABZR87_RS03150at 662.518 kb on - strand, within ABZR87_RS03150at 662.518 kb on - strand, within ABZR87_RS03150at 662.518 kb on - strand, within ABZR87_RS03150at 662.518 kb on - strand, within ABZR87_RS03150at 662.518 kb on - strand, within ABZR87_RS03150at 662.518 kb on - strand, within ABZR87_RS03150at 662.544 kb on + strand, within ABZR87_RS03150at 662.544 kb on + strand, within ABZR87_RS03150at 662.544 kb on + strand, within ABZR87_RS03150at 662.544 kb on + strand, within ABZR87_RS03150at 662.559 kb on + strandat 662.559 kb on + strandat 662.559 kb on + strandat 662.560 kb on - strandat 662.652 kb on + strandat 662.652 kb on + strandat 662.653 kb on - strandat 662.720 kb on + strandat 662.721 kb on - strandat 662.721 kb on - strandat 662.721 kb on - strandat 662.721 kb on - strandat 662.721 kb on - strandat 662.743 kb on - strandat 662.743 kb on - strandat 662.809 kb on - strandat 662.809 kb on - strandat 662.859 kb on - strandat 662.859 kb on - strandat 662.908 kb on + strandat 662.971 kb on - strandat 663.087 kb on + strandat 663.087 kb on + strandat 663.087 kb on + strandat 663.088 kb on - strandat 663.180 kb on - strand, within ABZR87_RS03155at 663.224 kb on + strand, within ABZR87_RS03155at 663.225 kb on - strand, within ABZR87_RS03155at 663.335 kb on + strand, within ABZR87_RS03155at 663.336 kb on - strand, within ABZR87_RS03155at 663.336 kb on - strand, within ABZR87_RS03155at 663.950 kb on + strand, within ABZR87_RS03155at 663.950 kb on + strand, within ABZR87_RS03155at 663.950 kb on + strand, within ABZR87_RS03155at 663.951 kb on - strand, within ABZR87_RS03155at 663.973 kb on + strand, within ABZR87_RS03155at 663.973 kb on + strand, within ABZR87_RS03155at 663.973 kb on + strand, within ABZR87_RS03155at 663.973 kb on + strand, within ABZR87_RS03155at 663.973 kb on + strand, within ABZR87_RS03155at 663.974 kb on - strand, within ABZR87_RS03155at 663.974 kb on - strand, within ABZR87_RS03155at 663.974 kb on - strand, within ABZR87_RS03155at 663.974 kb on - strand, within ABZR87_RS03155at 663.974 kb on - strand, within ABZR87_RS03155at 664.415 kb on + strand, within ABZR87_RS03155at 664.415 kb on + strand, within ABZR87_RS03155at 664.415 kb on + strand, within ABZR87_RS03155at 664.415 kb on + strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.416 kb on - strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.508 kb on + strand, within ABZR87_RS03155at 664.629 kb on + strand, within ABZR87_RS03155at 664.630 kb on - strand, within ABZR87_RS03155at 664.823 kb on + strand, within ABZR87_RS03155at 664.919 kb on - strand, within ABZR87_RS03155at 665.202 kb on + strandat 665.202 kb on + strandat 665.202 kb on + strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.203 kb on - strandat 665.435 kb on + strand, within ABZR87_RS03160at 665.435 kb on + strand, within ABZR87_RS03160at 665.435 kb on + strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.436 kb on - strand, within ABZR87_RS03160at 665.438 kb on + strand, within ABZR87_RS03160at 665.439 kb on - strand, within ABZR87_RS03160at 665.439 kb on - strand, within ABZR87_RS03160at 665.451 kb on - strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.696 kb on + strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.697 kb on - strand, within ABZR87_RS03160at 665.738 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.768 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.774 kb on + strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 665.775 kb on - strand, within ABZR87_RS03160at 666.056 kb on + strand, within ABZR87_RS03160at 666.056 kb on + strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.057 kb on - strand, within ABZR87_RS03160at 666.107 kb on + strand, within ABZR87_RS03160at 666.107 kb on + strand, within ABZR87_RS03160at 666.108 kb on - strand, within ABZR87_RS03160at 666.108 kb on - strand, within ABZR87_RS03160

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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661,968 + ABZR87_RS03150 0.34 -3.6
661,968 + ABZR87_RS03150 0.34 +1.9
661,968 + ABZR87_RS03150 0.34 +0.9
661,968 + ABZR87_RS03150 0.34 +0.9
661,968 + ABZR87_RS03150 0.34 -2.5
661,968 + ABZR87_RS03150 0.34 +0.6
661,968 + ABZR87_RS03150 0.34 -1.1
661,968 + ABZR87_RS03150 0.34 +2.5
661,969 - ABZR87_RS03150 0.34 -1.1
661,969 - ABZR87_RS03150 0.34 +1.5
661,969 - ABZR87_RS03150 0.34 -1.6
661,969 - ABZR87_RS03150 0.34 -1.9
661,969 - ABZR87_RS03150 0.34 -0.1
661,969 - ABZR87_RS03150 0.34 +3.2
661,969 - ABZR87_RS03150 0.34 +0.7
661,969 - ABZR87_RS03150 0.34 -1.2
662,130 + ABZR87_RS03150 0.50 -2.8
662,130 + ABZR87_RS03150 0.50 +0.1
662,130 + ABZR87_RS03150 0.50 +0.9
662,130 + ABZR87_RS03150 0.50 +1.2
662,130 + ABZR87_RS03150 0.50 -0.3
662,130 + ABZR87_RS03150 0.50 +3.0
662,130 + ABZR87_RS03150 0.50 -1.8
662,131 - ABZR87_RS03150 0.50 -0.7
662,131 - ABZR87_RS03150 0.50 -2.1
662,131 - ABZR87_RS03150 0.50 -2.9
662,131 - ABZR87_RS03150 0.50 -2.4
662,211 + ABZR87_RS03150 0.58 -1.6
662,211 + ABZR87_RS03150 0.58 -0.9
662,211 + ABZR87_RS03150 0.58 -0.0
662,211 + ABZR87_RS03150 0.58 +0.0
662,211 + ABZR87_RS03150 0.58 +0.1
662,211 + ABZR87_RS03150 0.58 -2.3
662,211 + ABZR87_RS03150 0.58 +1.4
662,212 - ABZR87_RS03150 0.58 +0.3
662,212 - ABZR87_RS03150 0.58 +1.6
662,212 - ABZR87_RS03150 0.58 -1.0
662,232 + ABZR87_RS03150 0.60 -2.4
662,232 + ABZR87_RS03150 0.60 +0.6
662,233 - ABZR87_RS03150 0.60 +1.2
662,233 - ABZR87_RS03150 0.60 +2.6
662,358 + ABZR87_RS03150 0.72 +1.7
662,358 + ABZR87_RS03150 0.72 +0.7
662,359 - ABZR87_RS03150 0.72 -2.0
662,359 - ABZR87_RS03150 0.72 -0.6
662,359 - ABZR87_RS03150 0.72 -2.1
662,359 - ABZR87_RS03150 0.72 +3.6
662,359 - ABZR87_RS03150 0.72 +0.5
662,367 + ABZR87_RS03150 0.72 -2.7
662,436 + ABZR87_RS03150 0.79 +0.7
662,436 + ABZR87_RS03150 0.79 +2.0
662,436 + ABZR87_RS03150 0.79 +0.6
662,436 + ABZR87_RS03150 0.79 -3.1
662,437 - ABZR87_RS03150 0.79 -0.5
662,437 - ABZR87_RS03150 0.79 -2.1
662,437 - ABZR87_RS03150 0.79 +1.8
662,437 - ABZR87_RS03150 0.79 +1.3
662,437 - ABZR87_RS03150 0.79 -0.3
662,437 - ABZR87_RS03150 0.79 +0.6
662,437 - ABZR87_RS03150 0.79 +1.3
662,493 + ABZR87_RS03150 0.85 +1.2
662,494 - ABZR87_RS03150 0.85 -3.3
662,494 - ABZR87_RS03150 0.85 +1.7
662,494 - ABZR87_RS03150 0.85 +1.1
662,503 - ABZR87_RS03150 0.85 +0.1
662,517 + ABZR87_RS03150 0.87 -1.7
662,517 + ABZR87_RS03150 0.87 -3.5
662,517 + ABZR87_RS03150 0.87 -0.4
662,517 + ABZR87_RS03150 0.87 -0.4
662,517 + ABZR87_RS03150 0.87 -0.0
662,518 - ABZR87_RS03150 0.87 +2.2
662,518 - ABZR87_RS03150 0.87 +2.3
662,518 - ABZR87_RS03150 0.87 +1.3
662,518 - ABZR87_RS03150 0.87 +0.2
662,518 - ABZR87_RS03150 0.87 +0.1
662,518 - ABZR87_RS03150 0.87 -3.4
662,544 + ABZR87_RS03150 0.89 -0.2
662,544 + ABZR87_RS03150 0.89 +0.6
662,544 + ABZR87_RS03150 0.89 -0.1
662,544 + ABZR87_RS03150 0.89 -0.7
662,559 + -2.6
662,559 + -0.9
662,559 + +0.4
662,560 - -1.5
662,652 + -1.9
662,652 + -0.9
662,653 - +0.5
662,720 + -2.5
662,721 - +0.7
662,721 - +1.6
662,721 - +1.1
662,721 - +0.7
662,721 - +1.7
662,743 - +0.4
662,743 - -2.0
662,809 - -3.1
662,809 - +0.3
662,859 - +0.3
662,859 - -3.5
662,908 + -1.2
662,971 - -1.5
663,087 + -1.9
663,087 + +1.2
663,087 + +0.3
663,088 - -0.9
663,180 - ABZR87_RS03155 0.11 -1.4
663,224 + ABZR87_RS03155 0.13 +3.4
663,225 - ABZR87_RS03155 0.13 -1.9
663,335 + ABZR87_RS03155 0.18 +1.5
663,336 - ABZR87_RS03155 0.18 +0.5
663,336 - ABZR87_RS03155 0.18 +2.7
663,950 + ABZR87_RS03155 0.45 +0.4
663,950 + ABZR87_RS03155 0.45 +1.6
663,950 + ABZR87_RS03155 0.45 +2.0
663,951 - ABZR87_RS03155 0.45 +1.9
663,973 + ABZR87_RS03155 0.46 +1.0
663,973 + ABZR87_RS03155 0.46 -0.7
663,973 + ABZR87_RS03155 0.46 +0.7
663,973 + ABZR87_RS03155 0.46 +1.3
663,973 + ABZR87_RS03155 0.46 +1.2
663,974 - ABZR87_RS03155 0.46 +1.2
663,974 - ABZR87_RS03155 0.46 -1.3
663,974 - ABZR87_RS03155 0.46 +2.6
663,974 - ABZR87_RS03155 0.46 +1.3
663,974 - ABZR87_RS03155 0.46 +1.0
664,415 + ABZR87_RS03155 0.65 +2.1
664,415 + ABZR87_RS03155 0.65 +1.0
664,415 + ABZR87_RS03155 0.65 -0.3
664,415 + ABZR87_RS03155 0.65 +0.3
664,416 - ABZR87_RS03155 0.65 -1.5
664,416 - ABZR87_RS03155 0.65 +2.0
664,416 - ABZR87_RS03155 0.65 +0.9
664,416 - ABZR87_RS03155 0.65 -0.4
664,416 - ABZR87_RS03155 0.65 +0.6
664,416 - ABZR87_RS03155 0.65 +1.6
664,508 + ABZR87_RS03155 0.69 +3.1
664,508 + ABZR87_RS03155 0.69 -0.4
664,508 + ABZR87_RS03155 0.69 +1.7
664,508 + ABZR87_RS03155 0.69 +1.1
664,629 + ABZR87_RS03155 0.74 +2.4
664,630 - ABZR87_RS03155 0.75 +0.1
664,823 + ABZR87_RS03155 0.83 -0.5
664,919 - ABZR87_RS03155 0.87 +0.3
665,202 + -2.0
665,202 + +0.9
665,202 + +1.2
665,203 - -1.0
665,203 - +1.1
665,203 - -3.1
665,203 - +0.9
665,203 - +2.1
665,203 - -0.1
665,435 + ABZR87_RS03160 0.13 +2.1
665,435 + ABZR87_RS03160 0.13 +1.3
665,435 + ABZR87_RS03160 0.13 -0.4
665,436 - ABZR87_RS03160 0.13 +1.0
665,436 - ABZR87_RS03160 0.13 -0.6
665,436 - ABZR87_RS03160 0.13 +0.5
665,436 - ABZR87_RS03160 0.13 -3.4
665,438 + ABZR87_RS03160 0.13 -2.1
665,439 - ABZR87_RS03160 0.13 +0.1
665,439 - ABZR87_RS03160 0.13 -0.1
665,451 - ABZR87_RS03160 0.14 +0.3
665,696 + ABZR87_RS03160 0.34 +1.6
665,696 + ABZR87_RS03160 0.34 +1.3
665,696 + ABZR87_RS03160 0.34 +1.5
665,696 + ABZR87_RS03160 0.34 +0.9
665,696 + ABZR87_RS03160 0.34 +0.7
665,696 + ABZR87_RS03160 0.34 +2.9
665,697 - ABZR87_RS03160 0.34 -3.1
665,697 - ABZR87_RS03160 0.34 +1.5
665,697 - ABZR87_RS03160 0.34 -0.5
665,697 - ABZR87_RS03160 0.34 -0.2
665,697 - ABZR87_RS03160 0.34 -0.9
665,697 - ABZR87_RS03160 0.34 -0.3
665,697 - ABZR87_RS03160 0.34 -2.0
665,697 - ABZR87_RS03160 0.34 -0.8
665,738 + ABZR87_RS03160 0.37 +0.7
665,768 + ABZR87_RS03160 0.39 +0.9
665,768 + ABZR87_RS03160 0.39 -1.1
665,768 + ABZR87_RS03160 0.39 -1.6
665,768 + ABZR87_RS03160 0.39 +0.7
665,768 + ABZR87_RS03160 0.39 -1.0
665,768 + ABZR87_RS03160 0.39 -0.8
665,768 + ABZR87_RS03160 0.39 +3.3
665,774 + ABZR87_RS03160 0.40 +0.6
665,774 + ABZR87_RS03160 0.40 -0.3
665,774 + ABZR87_RS03160 0.40 +2.6
665,774 + ABZR87_RS03160 0.40 -0.5
665,775 - ABZR87_RS03160 0.40 +0.2
665,775 - ABZR87_RS03160 0.40 -0.3
665,775 - ABZR87_RS03160 0.40 -1.1
665,775 - ABZR87_RS03160 0.40 -0.5
665,775 - ABZR87_RS03160 0.40 -2.7
666,056 + ABZR87_RS03160 0.62 -0.1
666,056 + ABZR87_RS03160 0.62 +1.4
666,057 - ABZR87_RS03160 0.62 -2.5
666,057 - ABZR87_RS03160 0.62 +2.1
666,057 - ABZR87_RS03160 0.62 +0.3
666,107 + ABZR87_RS03160 0.66 +1.5
666,107 + ABZR87_RS03160 0.66 +1.8
666,108 - ABZR87_RS03160 0.66 +0.3
666,108 - ABZR87_RS03160 0.66 +1.9

Or see this region's nucleotide sequence