Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02310

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02295 and ABZR87_RS02300 are separated by 158 nucleotidesABZR87_RS02300 and ABZR87_RS02305 are separated by 9 nucleotidesABZR87_RS02305 and ABZR87_RS02310 overlap by 4 nucleotidesABZR87_RS02310 and ABZR87_RS02315 are separated by 124 nucleotides ABZR87_RS02295: ABZR87_RS02295 - hypothetical protein, at 492,628 to 492,939 _RS02295 ABZR87_RS02300: ABZR87_RS02300 - aminoacyl-tRNA deacylase, at 493,098 to 493,586 _RS02300 ABZR87_RS02305: ABZR87_RS02305 - CDGSH iron-sulfur domain-containing protein, at 493,596 to 493,820 _RS02305 ABZR87_RS02310: ABZR87_RS02310 - energy-dependent translational throttle protein EttA, at 493,817 to 495,484 _RS02310 ABZR87_RS02315: ABZR87_RS02315 - winged helix DNA-binding domain-containing protein, at 495,609 to 496,739 _RS02315 Position (kb) 493 494 495 496Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 492.823 kb on + strand, within ABZR87_RS02295at 492.832 kb on + strand, within ABZR87_RS02295at 492.832 kb on + strand, within ABZR87_RS02295at 492.832 kb on + strand, within ABZR87_RS02295at 492.835 kb on + strand, within ABZR87_RS02295at 492.851 kb on - strand, within ABZR87_RS02295at 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.048 kb on + strandat 493.049 kb on - strandat 493.049 kb on - strandat 493.149 kb on + strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.172 kb on + strand, within ABZR87_RS02300at 493.172 kb on + strand, within ABZR87_RS02300at 493.178 kb on + strand, within ABZR87_RS02300at 493.178 kb on + strand, within ABZR87_RS02300at 493.179 kb on - strand, within ABZR87_RS02300at 493.179 kb on - strand, within ABZR87_RS02300at 493.179 kb on - strand, within ABZR87_RS02300at 493.237 kb on + strand, within ABZR87_RS02300at 493.237 kb on + strand, within ABZR87_RS02300at 493.261 kb on - strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.417 kb on - strand, within ABZR87_RS02300at 493.417 kb on - strand, within ABZR87_RS02300at 493.417 kb on - strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.467 kb on + strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.502 kb on + strand, within ABZR87_RS02300at 493.502 kb on + strand, within ABZR87_RS02300at 493.502 kb on + strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.693 kb on + strand, within ABZR87_RS02305at 493.694 kb on - strand, within ABZR87_RS02305at 493.819 kb on - strandat 493.826 kb on - strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.905 kb on + strandat 493.906 kb on - strandat 493.906 kb on - strandat 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.206 kb on - strand, within ABZR87_RS02310at 494.206 kb on - strand, within ABZR87_RS02310at 494.316 kb on + strand, within ABZR87_RS02310at 494.317 kb on - strand, within ABZR87_RS02310at 494.317 kb on - strand, within ABZR87_RS02310at 494.401 kb on + strand, within ABZR87_RS02310at 494.401 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.826 kb on + strand, within ABZR87_RS02310at 494.826 kb on + strand, within ABZR87_RS02310at 494.827 kb on - strand, within ABZR87_RS02310at 495.153 kb on + strand, within ABZR87_RS02310at 495.154 kb on - strand, within ABZR87_RS02310at 495.162 kb on + strand, within ABZR87_RS02310at 495.162 kb on + strand, within ABZR87_RS02310at 495.162 kb on + strand, within ABZR87_RS02310at 495.163 kb on - strand, within ABZR87_RS02310at 495.268 kb on - strand, within ABZR87_RS02310at 495.268 kb on - strand, within ABZR87_RS02310at 495.474 kb on + strandat 495.474 kb on + strandat 495.489 kb on + strandat 495.489 kb on + strandat 495.489 kb on + strandat 495.490 kb on - strandat 495.490 kb on - strandat 495.532 kb on + strandat 495.532 kb on + strandat 495.532 kb on + strandat 495.532 kb on + strandat 495.532 kb on + strandat 495.533 kb on - strandat 495.617 kb on + strandat 495.618 kb on - strandat 495.682 kb on + strandat 495.783 kb on + strand, within ABZR87_RS02315at 495.784 kb on - strand, within ABZR87_RS02315at 496.054 kb on + strand, within ABZR87_RS02315at 496.054 kb on + strand, within ABZR87_RS02315at 496.055 kb on - strand, within ABZR87_RS02315at 496.254 kb on + strand, within ABZR87_RS02315at 496.255 kb on - strand, within ABZR87_RS02315at 496.290 kb on - strand, within ABZR87_RS02315at 496.339 kb on + strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315at 496.340 kb on - strand, within ABZR87_RS02315

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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492,823 + ABZR87_RS02295 0.62 +0.7
492,832 + ABZR87_RS02295 0.65 -0.4
492,832 + ABZR87_RS02295 0.65 -2.6
492,832 + ABZR87_RS02295 0.65 -1.5
492,835 + ABZR87_RS02295 0.66 +2.6
492,851 - ABZR87_RS02295 0.71 +0.7
493,038 + +0.0
493,038 + +0.9
493,038 + +2.8
493,038 + -0.7
493,038 + +0.0
493,038 + +0.1
493,038 + -2.2
493,038 + +0.7
493,038 + +1.0
493,038 + -0.3
493,038 + -0.1
493,038 + +1.3
493,038 + -0.7
493,039 - +1.4
493,039 - -0.7
493,039 - -0.2
493,039 - -0.5
493,039 - +2.1
493,039 - +0.7
493,048 + -0.5
493,049 - -0.1
493,049 - -1.2
493,149 + ABZR87_RS02300 0.10 +0.7
493,150 - ABZR87_RS02300 0.11 +0.7
493,150 - ABZR87_RS02300 0.11 -3.0
493,150 - ABZR87_RS02300 0.11 +0.3
493,150 - ABZR87_RS02300 0.11 -1.0
493,172 + ABZR87_RS02300 0.15 +0.4
493,172 + ABZR87_RS02300 0.15 -0.9
493,178 + ABZR87_RS02300 0.16 -0.5
493,178 + ABZR87_RS02300 0.16 -3.0
493,179 - ABZR87_RS02300 0.17 +2.7
493,179 - ABZR87_RS02300 0.17 +2.1
493,179 - ABZR87_RS02300 0.17 +1.3
493,237 + ABZR87_RS02300 0.28 -3.9
493,237 + ABZR87_RS02300 0.28 +0.4
493,261 - ABZR87_RS02300 0.33 +0.2
493,287 + ABZR87_RS02300 0.39 +2.6
493,287 + ABZR87_RS02300 0.39 +1.3
493,287 + ABZR87_RS02300 0.39 -2.7
493,287 + ABZR87_RS02300 0.39 -0.4
493,287 + ABZR87_RS02300 0.39 +1.1
493,287 + ABZR87_RS02300 0.39 +1.4
493,287 + ABZR87_RS02300 0.39 +2.0
493,288 - ABZR87_RS02300 0.39 -0.2
493,288 - ABZR87_RS02300 0.39 -3.5
493,288 - ABZR87_RS02300 0.39 +1.4
493,288 - ABZR87_RS02300 0.39 +2.7
493,288 - ABZR87_RS02300 0.39 +0.4
493,417 - ABZR87_RS02300 0.65 -1.5
493,417 - ABZR87_RS02300 0.65 +1.6
493,417 - ABZR87_RS02300 0.65 +2.7
493,431 + ABZR87_RS02300 0.68 -1.1
493,431 + ABZR87_RS02300 0.68 +1.6
493,431 + ABZR87_RS02300 0.68 -0.7
493,431 + ABZR87_RS02300 0.68 -1.1
493,432 - ABZR87_RS02300 0.68 +1.3
493,432 - ABZR87_RS02300 0.68 -2.3
493,432 - ABZR87_RS02300 0.68 -1.9
493,432 - ABZR87_RS02300 0.68 +1.5
493,432 - ABZR87_RS02300 0.68 -1.8
493,467 + ABZR87_RS02300 0.75 +0.6
493,468 - ABZR87_RS02300 0.76 +1.8
493,468 - ABZR87_RS02300 0.76 +0.4
493,468 - ABZR87_RS02300 0.76 +1.6
493,468 - ABZR87_RS02300 0.76 -2.5
493,502 + ABZR87_RS02300 0.83 -1.0
493,502 + ABZR87_RS02300 0.83 +0.6
493,502 + ABZR87_RS02300 0.83 -0.7
493,503 - ABZR87_RS02300 0.83 +2.4
493,503 - ABZR87_RS02300 0.83 +3.3
493,503 - ABZR87_RS02300 0.83 +0.4
493,503 - ABZR87_RS02300 0.83 +2.2
493,503 - ABZR87_RS02300 0.83 -1.1
493,503 - ABZR87_RS02300 0.83 -0.1
493,503 - ABZR87_RS02300 0.83 +0.6
493,503 - ABZR87_RS02300 0.83 +0.6
493,693 + ABZR87_RS02305 0.43 -2.0
493,694 - ABZR87_RS02305 0.44 -1.6
493,819 - -0.1
493,826 - -1.8
493,896 + -0.1
493,896 + -3.3
493,896 + -2.5
493,896 + -1.6
493,896 + -1.6
493,905 + +1.5
493,906 - -1.7
493,906 - -2.5
494,205 + ABZR87_RS02310 0.23 -2.5
494,205 + ABZR87_RS02310 0.23 -1.1
494,205 + ABZR87_RS02310 0.23 -2.9
494,205 + ABZR87_RS02310 0.23 +2.8
494,205 + ABZR87_RS02310 0.23 +1.5
494,206 - ABZR87_RS02310 0.23 +0.2
494,206 - ABZR87_RS02310 0.23 +2.4
494,316 + ABZR87_RS02310 0.30 +0.6
494,317 - ABZR87_RS02310 0.30 +0.2
494,317 - ABZR87_RS02310 0.30 -1.0
494,401 + ABZR87_RS02310 0.35 -2.1
494,401 + ABZR87_RS02310 0.35 -0.5
494,487 + ABZR87_RS02310 0.40 -1.5
494,487 + ABZR87_RS02310 0.40 -1.2
494,487 + ABZR87_RS02310 0.40 -1.2
494,487 + ABZR87_RS02310 0.40 -1.0
494,487 + ABZR87_RS02310 0.40 -0.8
494,488 - ABZR87_RS02310 0.40 -0.7
494,488 - ABZR87_RS02310 0.40 -3.1
494,488 - ABZR87_RS02310 0.40 -1.3
494,488 - ABZR87_RS02310 0.40 +0.2
494,488 - ABZR87_RS02310 0.40 -3.5
494,754 + ABZR87_RS02310 0.56 +0.2
494,754 + ABZR87_RS02310 0.56 -1.9
494,754 + ABZR87_RS02310 0.56 +0.8
494,754 + ABZR87_RS02310 0.56 -1.1
494,754 + ABZR87_RS02310 0.56 -1.5
494,754 + ABZR87_RS02310 0.56 +0.1
494,754 + ABZR87_RS02310 0.56 +1.3
494,755 - ABZR87_RS02310 0.56 -0.8
494,755 - ABZR87_RS02310 0.56 +0.7
494,755 - ABZR87_RS02310 0.56 -0.0
494,755 - ABZR87_RS02310 0.56 -1.1
494,755 - ABZR87_RS02310 0.56 -2.1
494,755 - ABZR87_RS02310 0.56 +1.6
494,755 - ABZR87_RS02310 0.56 +2.3
494,755 - ABZR87_RS02310 0.56 -2.6
494,826 + ABZR87_RS02310 0.60 +1.9
494,826 + ABZR87_RS02310 0.60 +0.2
494,827 - ABZR87_RS02310 0.61 +0.5
495,153 + ABZR87_RS02310 0.80 +0.5
495,154 - ABZR87_RS02310 0.80 +0.7
495,162 + ABZR87_RS02310 0.81 +0.6
495,162 + ABZR87_RS02310 0.81 +0.4
495,162 + ABZR87_RS02310 0.81 -0.5
495,163 - ABZR87_RS02310 0.81 -0.1
495,268 - ABZR87_RS02310 0.87 +0.0
495,268 - ABZR87_RS02310 0.87 -0.2
495,474 + -2.3
495,474 + -1.4
495,489 + -1.4
495,489 + +2.2
495,489 + +0.9
495,490 - +1.3
495,490 - -0.5
495,532 + -1.9
495,532 + +1.8
495,532 + -1.5
495,532 + +1.2
495,532 + -1.6
495,533 - -3.0
495,617 + -1.2
495,618 - -1.7
495,682 + -2.0
495,783 + ABZR87_RS02315 0.15 +1.5
495,784 - ABZR87_RS02315 0.15 +1.1
496,054 + ABZR87_RS02315 0.39 -1.7
496,054 + ABZR87_RS02315 0.39 +0.7
496,055 - ABZR87_RS02315 0.39 -0.4
496,254 + ABZR87_RS02315 0.57 -3.3
496,255 - ABZR87_RS02315 0.57 +0.9
496,290 - ABZR87_RS02315 0.60 +0.2
496,339 + ABZR87_RS02315 0.65 -0.6
496,340 - ABZR87_RS02315 0.65 -0.6
496,340 - ABZR87_RS02315 0.65 +0.2
496,340 - ABZR87_RS02315 0.65 +2.0
496,340 - ABZR87_RS02315 0.65 +1.7
496,340 - ABZR87_RS02315 0.65 -1.3

Or see this region's nucleotide sequence