Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01615

Experiment: Octanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotidesABZR87_RS01610 and ABZR87_RS01615 are separated by 52 nucleotidesABZR87_RS01615 and ABZR87_RS01620 are separated by 154 nucleotidesABZR87_RS01620 and ABZR87_RS01625 overlap by 4 nucleotides ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888 _RS01605 ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814 _RS01610 ABZR87_RS01615: ABZR87_RS01615 - RNB domain-containing ribonuclease, at 338,867 to 340,963 _RS01615 ABZR87_RS01620: ABZR87_RS01620 - chorismate lyase, at 341,118 to 341,696 _RS01620 ABZR87_RS01625: ABZR87_RS01625 - YqiA/YcfP family alpha/beta fold hydrolase, at 341,693 to 342,316 _RS01625 Position (kb) 338 339 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 338.096 kb on + strand, within ABZR87_RS01610at 338.097 kb on - strand, within ABZR87_RS01610at 338.112 kb on - strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.162 kb on + strand, within ABZR87_RS01610at 338.163 kb on - strand, within ABZR87_RS01610at 338.163 kb on - strand, within ABZR87_RS01610at 338.234 kb on + strand, within ABZR87_RS01610at 338.234 kb on + strand, within ABZR87_RS01610at 338.234 kb on + strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.235 kb on - strand, within ABZR87_RS01610at 338.237 kb on + strand, within ABZR87_RS01610at 338.246 kb on + strand, within ABZR87_RS01610at 338.247 kb on - strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.303 kb on + strand, within ABZR87_RS01610at 338.304 kb on - strand, within ABZR87_RS01610at 338.304 kb on - strand, within ABZR87_RS01610at 338.304 kb on - strand, within ABZR87_RS01610at 338.458 kb on - strand, within ABZR87_RS01610at 338.576 kb on + strand, within ABZR87_RS01610at 338.576 kb on + strand, within ABZR87_RS01610at 338.577 kb on - strand, within ABZR87_RS01610at 338.577 kb on - strand, within ABZR87_RS01610at 338.689 kb on - strand, within ABZR87_RS01610at 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.864 kb on + strandat 338.865 kb on - strandat 338.865 kb on - strandat 338.868 kb on + strandat 338.868 kb on + strandat 338.868 kb on + strandat 338.869 kb on - strandat 338.878 kb on + strandat 339.718 kb on - strand, within ABZR87_RS01615at 339.718 kb on - strand, within ABZR87_RS01615at 340.971 kb on + strandat 340.971 kb on + strandat 340.971 kb on - strandat 340.972 kb on - strandat 341.040 kb on + strandat 341.040 kb on + strandat 341.041 kb on - strandat 341.041 kb on - strandat 341.041 kb on - strandat 341.081 kb on - strandat 341.113 kb on + strandat 341.114 kb on - strandat 341.425 kb on + strand, within ABZR87_RS01620at 341.425 kb on + strand, within ABZR87_RS01620at 341.425 kb on + strand, within ABZR87_RS01620at 341.425 kb on + strand, within ABZR87_RS01620at 341.425 kb on + strand, within ABZR87_RS01620at 341.425 kb on + strand, within ABZR87_RS01620at 341.425 kb on + strand, within ABZR87_RS01620at 341.425 kb on + strand, within ABZR87_RS01620at 341.426 kb on - strand, within ABZR87_RS01620at 341.426 kb on - strand, within ABZR87_RS01620at 341.426 kb on - strand, within ABZR87_RS01620at 341.426 kb on - strand, within ABZR87_RS01620at 341.426 kb on - strand, within ABZR87_RS01620at 341.633 kb on - strand, within ABZR87_RS01620at 341.677 kb on + strandat 341.738 kb on - strandat 341.766 kb on + strand, within ABZR87_RS01625at 341.766 kb on + strand, within ABZR87_RS01625at 341.766 kb on + strand, within ABZR87_RS01625at 341.767 kb on - strand, within ABZR87_RS01625at 341.767 kb on - strand, within ABZR87_RS01625at 341.767 kb on - strand, within ABZR87_RS01625at 341.767 kb on - strand, within ABZR87_RS01625at 341.767 kb on - strand, within ABZR87_RS01625at 341.886 kb on + strand, within ABZR87_RS01625at 341.887 kb on - strand, within ABZR87_RS01625at 341.889 kb on + strand, within ABZR87_RS01625at 341.889 kb on + strand, within ABZR87_RS01625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
remove
338,096 + ABZR87_RS01610 0.21 +0.1
338,097 - ABZR87_RS01610 0.22 -2.1
338,112 - ABZR87_RS01610 0.23 +0.2
338,162 + ABZR87_RS01610 0.29 -1.7
338,162 + ABZR87_RS01610 0.29 +0.0
338,162 + ABZR87_RS01610 0.29 -0.4
338,162 + ABZR87_RS01610 0.29 -0.5
338,163 - ABZR87_RS01610 0.29 -0.1
338,163 - ABZR87_RS01610 0.29 -0.5
338,234 + ABZR87_RS01610 0.37 +1.0
338,234 + ABZR87_RS01610 0.37 +0.2
338,234 + ABZR87_RS01610 0.37 +2.1
338,235 - ABZR87_RS01610 0.37 +1.5
338,235 - ABZR87_RS01610 0.37 +1.6
338,235 - ABZR87_RS01610 0.37 -1.5
338,235 - ABZR87_RS01610 0.37 +1.2
338,235 - ABZR87_RS01610 0.37 -1.8
338,237 + ABZR87_RS01610 0.37 +0.0
338,246 + ABZR87_RS01610 0.38 -1.1
338,247 - ABZR87_RS01610 0.38 -2.2
338,303 + ABZR87_RS01610 0.44 +2.4
338,303 + ABZR87_RS01610 0.44 -2.6
338,303 + ABZR87_RS01610 0.44 +0.1
338,303 + ABZR87_RS01610 0.44 -3.2
338,304 - ABZR87_RS01610 0.44 +0.9
338,304 - ABZR87_RS01610 0.44 -0.4
338,304 - ABZR87_RS01610 0.44 +1.6
338,458 - ABZR87_RS01610 0.61 +0.4
338,576 + ABZR87_RS01610 0.74 +0.3
338,576 + ABZR87_RS01610 0.74 -0.4
338,577 - ABZR87_RS01610 0.74 +1.5
338,577 - ABZR87_RS01610 0.74 +1.9
338,689 - ABZR87_RS01610 0.86 -1.0
338,864 + -2.2
338,864 + +2.6
338,864 + -0.2
338,864 + -1.7
338,864 + +0.7
338,864 + -3.1
338,864 + -1.5
338,864 + -2.7
338,864 + +0.9
338,864 + +1.3
338,864 + -0.1
338,865 - -0.7
338,865 - -2.0
338,868 + -2.3
338,868 + +0.8
338,868 + -0.0
338,869 - +2.1
338,878 + +1.5
339,718 - ABZR87_RS01615 0.41 -0.4
339,718 - ABZR87_RS01615 0.41 -3.0
340,971 + -1.4
340,971 + -3.0
340,971 - -0.9
340,972 - +1.1
341,040 + -1.5
341,040 + -3.3
341,041 - +0.6
341,041 - +1.4
341,041 - +1.7
341,081 - +1.3
341,113 + +0.8
341,114 - -0.2
341,425 + ABZR87_RS01620 0.53 -2.0
341,425 + ABZR87_RS01620 0.53 -0.3
341,425 + ABZR87_RS01620 0.53 +0.2
341,425 + ABZR87_RS01620 0.53 +0.3
341,425 + ABZR87_RS01620 0.53 -2.2
341,425 + ABZR87_RS01620 0.53 -0.6
341,425 + ABZR87_RS01620 0.53 -2.4
341,425 + ABZR87_RS01620 0.53 +0.1
341,426 - ABZR87_RS01620 0.53 -0.9
341,426 - ABZR87_RS01620 0.53 -0.4
341,426 - ABZR87_RS01620 0.53 +0.3
341,426 - ABZR87_RS01620 0.53 -3.5
341,426 - ABZR87_RS01620 0.53 -3.6
341,633 - ABZR87_RS01620 0.89 -2.7
341,677 + -2.0
341,738 - -0.4
341,766 + ABZR87_RS01625 0.12 -1.6
341,766 + ABZR87_RS01625 0.12 -0.8
341,766 + ABZR87_RS01625 0.12 -0.7
341,767 - ABZR87_RS01625 0.12 -0.5
341,767 - ABZR87_RS01625 0.12 -1.6
341,767 - ABZR87_RS01625 0.12 +0.3
341,767 - ABZR87_RS01625 0.12 -1.2
341,767 - ABZR87_RS01625 0.12 +0.3
341,886 + ABZR87_RS01625 0.31 +0.2
341,887 - ABZR87_RS01625 0.31 +0.4
341,889 + ABZR87_RS01625 0.31 +1.2
341,889 + ABZR87_RS01625 0.31 -2.0

Or see this region's nucleotide sequence