Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01540 and ABZR87_RS01545 are separated by 57 nucleotides ABZR87_RS01545 and ABZR87_RS01550 are separated by 33 nucleotides
ABZR87_RS01540: ABZR87_RS01540 - arabinose ABC transporter substrate-binding protein, at 324,024 to 325,028
_RS01540
ABZR87_RS01545: ABZR87_RS01545 - L-arabinose ABC transporter ATP-binding protein AraG, at 325,086 to 326,615
_RS01545
ABZR87_RS01550: ABZR87_RS01550 - L-arabinose ABC transporter permease AraH, at 326,649 to 327,659
_RS01550
Position (kb) 325
326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 324.357 kb on + strand, within ABZR87_RS01540 at 324.357 kb on + strand, within ABZR87_RS01540 at 324.357 kb on + strand, within ABZR87_RS01540 at 324.357 kb on + strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.358 kb on - strand, within ABZR87_RS01540 at 324.544 kb on - strand, within ABZR87_RS01540 at 325.140 kb on + strand at 325.140 kb on + strand at 325.140 kb on + strand at 325.141 kb on - strand at 325.383 kb on + strand, within ABZR87_RS01545 at 325.383 kb on + strand, within ABZR87_RS01545 at 325.384 kb on - strand, within ABZR87_RS01545 at 325.384 kb on - strand, within ABZR87_RS01545 at 325.384 kb on - strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.713 kb on + strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.714 kb on - strand, within ABZR87_RS01545 at 325.740 kb on + strand, within ABZR87_RS01545 at 325.740 kb on + strand, within ABZR87_RS01545 at 325.741 kb on - strand, within ABZR87_RS01545 at 325.741 kb on - strand, within ABZR87_RS01545 at 325.866 kb on + strand, within ABZR87_RS01545 at 325.867 kb on - strand, within ABZR87_RS01545 at 325.867 kb on - strand, within ABZR87_RS01545 at 325.872 kb on + strand, within ABZR87_RS01545 at 325.872 kb on + strand, within ABZR87_RS01545 at 325.922 kb on - strand, within ABZR87_RS01545 at 326.029 kb on - strand, within ABZR87_RS01545 at 326.433 kb on + strand, within ABZR87_RS01545 at 326.433 kb on + strand, within ABZR87_RS01545 at 326.434 kb on - strand, within ABZR87_RS01545 at 326.434 kb on - strand, within ABZR87_RS01545 at 326.445 kb on + strand, within ABZR87_RS01545 at 326.445 kb on + strand, within ABZR87_RS01545 at 326.445 kb on + strand, within ABZR87_RS01545 at 326.446 kb on - strand, within ABZR87_RS01545 at 326.446 kb on - strand, within ABZR87_RS01545 at 326.446 kb on - strand, within ABZR87_RS01545 at 326.648 kb on + strand at 326.648 kb on + strand at 326.648 kb on + strand at 326.648 kb on + strand at 326.648 kb on + strand at 326.649 kb on - strand at 326.649 kb on - strand at 326.707 kb on + strand at 326.707 kb on + strand at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.976 kb on - strand, within ABZR87_RS01550 at 327.054 kb on + strand, within ABZR87_RS01550 at 327.055 kb on - strand, within ABZR87_RS01550 at 327.198 kb on + strand, within ABZR87_RS01550 at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.585 kb on + strand at 327.585 kb on + strand at 327.586 kb on - strand at 327.586 kb on - strand at 327.586 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 324,357 + ABZR87_RS01540 0.33 +1.0 324,357 + ABZR87_RS01540 0.33 -0.3 324,357 + ABZR87_RS01540 0.33 -0.4 324,357 + ABZR87_RS01540 0.33 -0.1 324,358 - ABZR87_RS01540 0.33 -2.4 324,358 - ABZR87_RS01540 0.33 +1.2 324,358 - ABZR87_RS01540 0.33 -2.8 324,358 - ABZR87_RS01540 0.33 +0.0 324,544 - ABZR87_RS01540 0.52 +0.4 325,140 + +1.9 325,140 + +2.0 325,140 + -0.7 325,141 - +0.4 325,383 + ABZR87_RS01545 0.19 +0.8 325,383 + ABZR87_RS01545 0.19 -0.1 325,384 - ABZR87_RS01545 0.19 -2.1 325,384 - ABZR87_RS01545 0.19 +1.3 325,384 - ABZR87_RS01545 0.19 +1.2 325,713 + ABZR87_RS01545 0.41 -0.6 325,713 + ABZR87_RS01545 0.41 +2.0 325,713 + ABZR87_RS01545 0.41 -0.2 325,713 + ABZR87_RS01545 0.41 -1.1 325,714 - ABZR87_RS01545 0.41 +0.6 325,714 - ABZR87_RS01545 0.41 -0.1 325,714 - ABZR87_RS01545 0.41 -0.4 325,740 + ABZR87_RS01545 0.43 -0.2 325,740 + ABZR87_RS01545 0.43 +0.5 325,741 - ABZR87_RS01545 0.43 -2.6 325,741 - ABZR87_RS01545 0.43 -2.8 325,866 + ABZR87_RS01545 0.51 -0.2 325,867 - ABZR87_RS01545 0.51 -1.8 325,867 - ABZR87_RS01545 0.51 +0.5 325,872 + ABZR87_RS01545 0.51 +1.2 325,872 + ABZR87_RS01545 0.51 -1.8 325,922 - ABZR87_RS01545 0.55 +1.8 326,029 - ABZR87_RS01545 0.62 +2.9 326,433 + ABZR87_RS01545 0.88 -2.4 326,433 + ABZR87_RS01545 0.88 -0.4 326,434 - ABZR87_RS01545 0.88 -3.2 326,434 - ABZR87_RS01545 0.88 +2.1 326,445 + ABZR87_RS01545 0.89 +2.7 326,445 + ABZR87_RS01545 0.89 -3.3 326,445 + ABZR87_RS01545 0.89 +3.6 326,446 - ABZR87_RS01545 0.89 +2.2 326,446 - ABZR87_RS01545 0.89 -0.7 326,446 - ABZR87_RS01545 0.89 -2.8 326,648 + +0.7 326,648 + -1.8 326,648 + +1.3 326,648 + +1.7 326,648 + +1.5 326,649 - -1.4 326,649 - +1.8 326,707 + +1.2 326,707 + +5.5 326,975 + ABZR87_RS01550 0.32 +1.9 326,975 + ABZR87_RS01550 0.32 +1.9 326,975 + ABZR87_RS01550 0.32 -1.1 326,976 - ABZR87_RS01550 0.32 -1.7 327,054 + ABZR87_RS01550 0.40 +0.2 327,055 - ABZR87_RS01550 0.40 +0.3 327,198 + ABZR87_RS01550 0.54 +0.9 327,579 + -0.1 327,579 + -3.3 327,579 + +0.5 327,579 + +0.8 327,579 + -2.2 327,579 + +2.2 327,579 + +2.8 327,579 + -2.1 327,579 + +0.8 327,579 + -0.7 327,579 + -2.0 327,579 + -1.0 327,580 - +0.4 327,580 - +2.5 327,580 - +1.5 327,580 - -2.6 327,580 - -0.6 327,580 - +1.3 327,585 + +1.4 327,585 + +0.6 327,586 - +0.5 327,586 - -2.9 327,586 - -3.5
Or see this region's nucleotide sequence