Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00970

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00965 and ABZR87_RS00970 are separated by 150 nucleotidesABZR87_RS00970 and ABZR87_RS00975 are separated by 135 nucleotides ABZR87_RS00965: ABZR87_RS00965 - bifunctional anthranilate synthase component I family protein/class IV aminotransferase, at 190,879 to 192,777 _RS00965 ABZR87_RS00970: ABZR87_RS00970 - molecular chaperone DnaJ, at 192,928 to 194,076 _RS00970 ABZR87_RS00975: ABZR87_RS00975 - molecular chaperone DnaK, at 194,212 to 196,164 _RS00975 Position (kb) 192 193 194 195Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 192.225 kb on - strand, within ABZR87_RS00965at 192.258 kb on - strand, within ABZR87_RS00965at 192.258 kb on - strand, within ABZR87_RS00965at 192.299 kb on + strand, within ABZR87_RS00965at 192.299 kb on + strand, within ABZR87_RS00965at 192.300 kb on - strand, within ABZR87_RS00965at 192.305 kb on + strand, within ABZR87_RS00965at 192.305 kb on + strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.306 kb on - strand, within ABZR87_RS00965at 192.317 kb on + strand, within ABZR87_RS00965at 192.317 kb on + strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.318 kb on - strand, within ABZR87_RS00965at 192.366 kb on + strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.367 kb on - strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.368 kb on + strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.369 kb on - strand, within ABZR87_RS00965at 192.378 kb on - strand, within ABZR87_RS00965at 192.378 kb on - strand, within ABZR87_RS00965at 192.579 kb on - strand, within ABZR87_RS00965at 192.680 kb on + strandat 192.680 kb on + strandat 192.680 kb on + strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.681 kb on - strandat 192.689 kb on + strandat 192.808 kb on + strandat 192.808 kb on + strandat 192.808 kb on + strandat 192.809 kb on - strandat 192.809 kb on - strandat 192.809 kb on - strandat 192.827 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.865 kb on + strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.866 kb on - strandat 192.874 kb on - strandat 192.883 kb on - strandat 192.911 kb on + strandat 192.917 kb on + strandat 192.917 kb on + strandat 192.918 kb on - strandat 192.918 kb on - strandat 192.929 kb on + strandat 192.929 kb on + strandat 192.930 kb on - strandat 192.930 kb on - strandat 192.930 kb on - strandat 192.949 kb on + strandat 192.950 kb on - strandat 192.950 kb on - strandat 192.950 kb on - strandat 193.082 kb on + strand, within ABZR87_RS00970at 193.082 kb on + strand, within ABZR87_RS00970at 193.313 kb on + strand, within ABZR87_RS00970at 193.313 kb on + strand, within ABZR87_RS00970at 193.357 kb on - strand, within ABZR87_RS00970at 194.118 kb on - strandat 194.181 kb on - strandat 194.181 kb on - strandat 194.181 kb on - strandat 194.185 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.213 kb on + strandat 194.214 kb on - strandat 194.214 kb on - strandat 194.256 kb on + strandat 194.354 kb on + strandat 194.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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192,225 - ABZR87_RS00965 0.71 -1.8
192,258 - ABZR87_RS00965 0.73 -3.4
192,258 - ABZR87_RS00965 0.73 -0.6
192,299 + ABZR87_RS00965 0.75 -3.5
192,299 + ABZR87_RS00965 0.75 -3.3
192,300 - ABZR87_RS00965 0.75 -5.3
192,305 + ABZR87_RS00965 0.75 -2.0
192,305 + ABZR87_RS00965 0.75 -2.5
192,306 - ABZR87_RS00965 0.75 -3.5
192,306 - ABZR87_RS00965 0.75 -2.2
192,306 - ABZR87_RS00965 0.75 -4.6
192,317 + ABZR87_RS00965 0.76 +1.4
192,317 + ABZR87_RS00965 0.76 -2.0
192,318 - ABZR87_RS00965 0.76 -2.2
192,318 - ABZR87_RS00965 0.76 -3.3
192,318 - ABZR87_RS00965 0.76 -2.0
192,318 - ABZR87_RS00965 0.76 -3.5
192,318 - ABZR87_RS00965 0.76 -2.2
192,366 + ABZR87_RS00965 0.78 -1.2
192,367 - ABZR87_RS00965 0.78 -3.4
192,367 - ABZR87_RS00965 0.78 -2.7
192,367 - ABZR87_RS00965 0.78 -3.1
192,368 + ABZR87_RS00965 0.78 -2.7
192,368 + ABZR87_RS00965 0.78 -2.2
192,368 + ABZR87_RS00965 0.78 -3.5
192,368 + ABZR87_RS00965 0.78 -3.9
192,368 + ABZR87_RS00965 0.78 -1.8
192,368 + ABZR87_RS00965 0.78 -3.3
192,368 + ABZR87_RS00965 0.78 -3.2
192,368 + ABZR87_RS00965 0.78 -3.9
192,368 + ABZR87_RS00965 0.78 -2.8
192,369 - ABZR87_RS00965 0.78 -1.7
192,369 - ABZR87_RS00965 0.78 -2.9
192,369 - ABZR87_RS00965 0.78 -2.9
192,369 - ABZR87_RS00965 0.78 -2.7
192,369 - ABZR87_RS00965 0.78 -2.5
192,378 - ABZR87_RS00965 0.79 -1.0
192,378 - ABZR87_RS00965 0.79 +1.3
192,579 - ABZR87_RS00965 0.90 -3.4
192,680 + -3.8
192,680 + -3.0
192,680 + -2.7
192,681 - +0.2
192,681 - -2.4
192,681 - -3.4
192,681 - -3.5
192,689 + -2.5
192,808 + -0.2
192,808 + +1.3
192,808 + +0.2
192,809 - +2.1
192,809 - -1.3
192,809 - +0.5
192,827 + -0.7
192,865 + -2.5
192,865 + -1.4
192,865 + -2.8
192,865 + -2.9
192,865 + -1.8
192,865 + -2.9
192,865 + -3.1
192,866 - +0.5
192,866 - +2.0
192,866 - -2.4
192,866 - +0.8
192,866 - -0.8
192,866 - +0.5
192,866 - -2.3
192,874 - -2.8
192,883 - +0.6
192,911 + -2.6
192,917 + -1.5
192,917 + -3.9
192,918 - -3.5
192,918 - -0.8
192,929 + -4.6
192,929 + -4.4
192,930 - -0.6
192,930 - -1.6
192,930 - -2.2
192,949 + -1.7
192,950 - +1.3
192,950 - -0.8
192,950 - -2.2
193,082 + ABZR87_RS00970 0.13 +2.0
193,082 + ABZR87_RS00970 0.13 +2.0
193,313 + ABZR87_RS00970 0.34 +1.0
193,313 + ABZR87_RS00970 0.34 +0.4
193,357 - ABZR87_RS00970 0.37 -1.6
194,118 - -1.3
194,181 - -1.0
194,181 - -2.2
194,181 - -1.0
194,185 + -1.2
194,213 + -0.8
194,213 + -1.6
194,213 + -3.3
194,213 + -1.2
194,214 - -2.1
194,214 - +1.0
194,256 + +2.0
194,354 + -0.8
194,355 - +0.4

Or see this region's nucleotide sequence