Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00240 and ABZR87_RS00245 are separated by 83 nucleotides ABZR87_RS00245 and ABZR87_RS00250 are separated by 23 nucleotides ABZR87_RS00250 and ABZR87_RS00255 overlap by 4 nucleotides
ABZR87_RS00240: ABZR87_RS00240 - dihydroxy-acid dehydratase, at 46,899 to 48,758
_RS00240
ABZR87_RS00245: ABZR87_RS00245 - 2,5-didehydrogluconate reductase DkgB, at 48,842 to 49,648
_RS00245
ABZR87_RS00250: ABZR87_RS00250 - MFS transporter, at 49,672 to 50,874
_RS00250
ABZR87_RS00255: ABZR87_RS00255 - TIGR03571 family LLM class oxidoreductase, at 50,871 to 51,815
_RS00255
Position (kb) 49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 48.820 kb on + strand at 48.820 kb on + strand at 48.837 kb on + strand at 48.838 kb on - strand at 48.838 kb on - strand at 48.838 kb on - strand at 48.838 kb on - strand at 48.838 kb on - strand at 48.838 kb on - strand at 48.838 kb on - strand at 48.838 kb on - strand at 49.113 kb on + strand, within ABZR87_RS00245 at 49.113 kb on + strand, within ABZR87_RS00245 at 49.113 kb on + strand, within ABZR87_RS00245 at 49.113 kb on + strand, within ABZR87_RS00245 at 49.113 kb on + strand, within ABZR87_RS00245 at 49.114 kb on - strand, within ABZR87_RS00245 at 49.114 kb on - strand, within ABZR87_RS00245 at 49.114 kb on - strand, within ABZR87_RS00245 at 49.173 kb on + strand, within ABZR87_RS00245 at 49.235 kb on + strand, within ABZR87_RS00245 at 49.236 kb on - strand, within ABZR87_RS00245 at 49.236 kb on - strand, within ABZR87_RS00245 at 49.377 kb on + strand, within ABZR87_RS00245 at 49.438 kb on - strand, within ABZR87_RS00245 at 49.530 kb on + strand, within ABZR87_RS00245 at 49.531 kb on - strand, within ABZR87_RS00245 at 50.171 kb on + strand, within ABZR87_RS00250 at 50.171 kb on + strand, within ABZR87_RS00250 at 50.171 kb on + strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.172 kb on - strand, within ABZR87_RS00250 at 50.177 kb on + strand, within ABZR87_RS00250 at 50.177 kb on + strand, within ABZR87_RS00250 at 50.178 kb on - strand, within ABZR87_RS00250 at 50.178 kb on - strand, within ABZR87_RS00250 at 50.178 kb on - strand, within ABZR87_RS00250 at 50.693 kb on + strand, within ABZR87_RS00250 at 50.728 kb on + strand, within ABZR87_RS00250 at 50.728 kb on + strand, within ABZR87_RS00250 at 50.728 kb on + strand, within ABZR87_RS00250 at 50.881 kb on + strand at 50.881 kb on + strand at 50.881 kb on + strand at 50.881 kb on + strand at 50.882 kb on - strand at 51.115 kb on + strand, within ABZR87_RS00255 at 51.115 kb on + strand, within ABZR87_RS00255 at 51.115 kb on + strand, within ABZR87_RS00255 at 51.116 kb on - strand, within ABZR87_RS00255 at 51.116 kb on - strand, within ABZR87_RS00255 at 51.327 kb on + strand, within ABZR87_RS00255 at 51.327 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.604 kb on + strand, within ABZR87_RS00255 at 51.605 kb on - strand, within ABZR87_RS00255 at 51.866 kb on + strand at 51.866 kb on + strand at 51.866 kb on + strand at 51.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 48,820 + +1.2 48,820 + -1.6 48,837 + -2.6 48,838 - +0.1 48,838 - -3.1 48,838 - -0.1 48,838 - +0.2 48,838 - +2.5 48,838 - +1.8 48,838 - +2.0 48,838 - -1.2 49,113 + ABZR87_RS00245 0.34 +0.6 49,113 + ABZR87_RS00245 0.34 +0.4 49,113 + ABZR87_RS00245 0.34 -2.1 49,113 + ABZR87_RS00245 0.34 -2.5 49,113 + ABZR87_RS00245 0.34 -2.3 49,114 - ABZR87_RS00245 0.34 +1.4 49,114 - ABZR87_RS00245 0.34 -0.4 49,114 - ABZR87_RS00245 0.34 +2.0 49,173 + ABZR87_RS00245 0.41 +1.3 49,235 + ABZR87_RS00245 0.49 -1.8 49,236 - ABZR87_RS00245 0.49 +0.5 49,236 - ABZR87_RS00245 0.49 -0.9 49,377 + ABZR87_RS00245 0.66 -0.4 49,438 - ABZR87_RS00245 0.74 +2.3 49,530 + ABZR87_RS00245 0.85 +0.4 49,531 - ABZR87_RS00245 0.85 +0.2 50,171 + ABZR87_RS00250 0.41 -1.0 50,171 + ABZR87_RS00250 0.41 -1.0 50,171 + ABZR87_RS00250 0.41 +1.6 50,172 - ABZR87_RS00250 0.42 -0.5 50,172 - ABZR87_RS00250 0.42 -1.4 50,172 - ABZR87_RS00250 0.42 +1.0 50,172 - ABZR87_RS00250 0.42 -1.3 50,172 - ABZR87_RS00250 0.42 +1.0 50,177 + ABZR87_RS00250 0.42 +0.2 50,177 + ABZR87_RS00250 0.42 +1.0 50,178 - ABZR87_RS00250 0.42 -0.7 50,178 - ABZR87_RS00250 0.42 -2.7 50,178 - ABZR87_RS00250 0.42 -0.2 50,693 + ABZR87_RS00250 0.85 +0.4 50,728 + ABZR87_RS00250 0.88 -2.5 50,728 + ABZR87_RS00250 0.88 +0.9 50,728 + ABZR87_RS00250 0.88 +1.1 50,881 + +1.4 50,881 + -0.1 50,881 + +0.6 50,881 + -0.1 50,882 - +1.8 51,115 + ABZR87_RS00255 0.26 +1.5 51,115 + ABZR87_RS00255 0.26 +0.5 51,115 + ABZR87_RS00255 0.26 -2.0 51,116 - ABZR87_RS00255 0.26 -0.6 51,116 - ABZR87_RS00255 0.26 +0.0 51,327 + ABZR87_RS00255 0.48 -2.0 51,327 + ABZR87_RS00255 0.48 +1.6 51,604 + ABZR87_RS00255 0.78 +0.8 51,604 + ABZR87_RS00255 0.78 +0.6 51,604 + ABZR87_RS00255 0.78 +0.7 51,605 - ABZR87_RS00255 0.78 +1.0 51,866 + +0.0 51,866 + +1.1 51,866 + +0.4 51,867 - -2.0
Or see this region's nucleotide sequence