Strain Fitness in Sinorhizobium meliloti 1021 around SMc04411

Experiment: L-Lysine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc04410 and SMc04411 are separated by 172 nucleotidesSMc04411 and SMc04083 are separated by 346 nucleotides SMc04410: SMc04410 - aspartate-semialdehyde dehydrogenase, at 3,617,313 to 3,618,347 SMc04410 SMc04411: SMc04411 - membrane-bound lytic murein transglycosylase signal peptide protein, at 3,618,520 to 3,619,341 SMc04411 SMc04083: SMc04083 - carbonic anhydrase, at 3,619,688 to 3,620,371 SMc04083 Position (kb) 3618 3619 3620Strain fitness (log2 ratio) -1 0 1at 3618.390 kb on + strandat 3618.519 kb on + strandat 3619.387 kb on + strandat 3619.689 kb on + strandat 3619.690 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
remove
3,618,390 + -0.3
3,618,519 + -0.6
3,619,387 + +0.2
3,619,689 + -0.7
3,619,690 - +0.5

Or see this region's nucleotide sequence