Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01156 and SMc01155 are separated by 4 nucleotides SMc01155 and SMc01154 are separated by 145 nucleotides SMc01154 and SMc01153 are separated by 57 nucleotides
SMc01156: SMc01156 - ubiquinone biosynthesis protein, at 393,673 to 395,247
SMc01156
SMc01155: SMc01155 - ubiquinone/menaquinone biosynthesis methyltransferase, at 395,252 to 396,064
SMc01155
SMc01154: SMc01154 - formamidopyrimidine-DNA glycosylase, at 396,210 to 397,115
SMc01154
SMc01153: SMc01153 - enoyl-CoA hydratase, at 397,173 to 397,946
SMc01153
Position (kb) 396
397
398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.128 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.130 kb on - strand at 396.187 kb on + strand at 396.188 kb on - strand at 396.385 kb on - strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.588 kb on + strand, within SMc01154 at 396.589 kb on - strand, within SMc01154 at 396.589 kb on - strand, within SMc01154 at 396.788 kb on + strand, within SMc01154 at 396.788 kb on + strand, within SMc01154 at 396.789 kb on - strand, within SMc01154 at 396.792 kb on + strand, within SMc01154 at 397.009 kb on - strand, within SMc01154 at 397.066 kb on + strand at 397.066 kb on + strand at 397.067 kb on - strand at 397.067 kb on - strand at 397.070 kb on - strand at 397.070 kb on - strand at 397.070 kb on - strand at 397.092 kb on + strand at 397.180 kb on - strand at 397.568 kb on + strand, within SMc01153 at 397.569 kb on - strand, within SMc01153
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 396,128 - -1.9 396,130 - -0.2 396,130 - -0.6 396,130 - -0.6 396,130 - -0.7 396,130 - -1.1 396,130 - -1.6 396,130 - -0.6 396,187 + +0.3 396,188 - -0.2 396,385 - SMc01154 0.19 +0.6 396,588 + SMc01154 0.42 +0.6 396,588 + SMc01154 0.42 +0.2 396,588 + SMc01154 0.42 +1.2 396,589 - SMc01154 0.42 -0.4 396,589 - SMc01154 0.42 +0.8 396,788 + SMc01154 0.64 -0.3 396,788 + SMc01154 0.64 -0.2 396,789 - SMc01154 0.64 -0.8 396,792 + SMc01154 0.64 +0.6 397,009 - SMc01154 0.88 +2.1 397,066 + -1.0 397,066 + -0.1 397,067 - -0.4 397,067 - -0.2 397,070 - +1.6 397,070 - -1.2 397,070 - -0.1 397,092 + +0.6 397,180 - +1.0 397,568 + SMc01153 0.51 +0.8 397,569 - SMc01153 0.51 -2.7
Or see this region's nucleotide sequence