Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1081 and SMa1082 are separated by 281 nucleotides SMa1082 and SMa1084 are separated by 94 nucleotides SMa1084 and SMa1086 are separated by 179 nucleotides SMa1086 and SMa1087 are separated by 101 nucleotides
SMa1081: SMa1081 - hypothetical protein, at 589,907 to 590,068
SMa1081
SMa1082: SMa1082 - hypothetical protein, at 590,350 to 590,970
SMa1082
SMa1084: SMa1084 - phosphoketolase, at 591,065 to 593,440
SMa1084
SMa1086: SMa1086 - hypothetical protein, at 593,620 to 594,294
SMa1086
SMa1087: SMa1087 - cation transport P-type ATPase, at 594,396 to 596,597
SMa1087
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 590.113 kb on + strand at 590.114 kb on - strand at 590.114 kb on - strand at 590.172 kb on + strand at 590.172 kb on + strand at 590.173 kb on - strand at 590.173 kb on - strand at 590.352 kb on - strand at 590.352 kb on - strand at 590.352 kb on - strand at 590.377 kb on + strand at 590.377 kb on + strand at 590.378 kb on - strand at 590.423 kb on + strand, within SMa1082 at 590.424 kb on - strand, within SMa1082 at 590.456 kb on - strand, within SMa1082 at 590.571 kb on + strand, within SMa1082 at 590.583 kb on + strand, within SMa1082 at 590.583 kb on + strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.584 kb on - strand, within SMa1082 at 590.802 kb on + strand, within SMa1082 at 590.802 kb on + strand, within SMa1082 at 590.928 kb on + strand at 591.012 kb on + strand at 591.012 kb on + strand at 591.032 kb on - strand at 591.142 kb on - strand at 591.142 kb on - strand at 591.142 kb on - strand at 591.306 kb on + strand, within SMa1084 at 591.307 kb on - strand, within SMa1084 at 591.345 kb on + strand, within SMa1084 at 591.346 kb on - strand, within SMa1084 at 591.718 kb on - strand, within SMa1084 at 591.760 kb on + strand, within SMa1084 at 591.760 kb on + strand, within SMa1084 at 591.884 kb on + strand, within SMa1084 at 591.884 kb on + strand, within SMa1084 at 591.884 kb on + strand, within SMa1084 at 591.885 kb on - strand, within SMa1084 at 591.889 kb on - strand, within SMa1084 at 591.889 kb on - strand at 591.889 kb on - strand, within SMa1084 at 591.964 kb on + strand, within SMa1084 at 591.965 kb on - strand, within SMa1084 at 591.994 kb on - strand, within SMa1084 at 591.994 kb on - strand, within SMa1084 at 591.994 kb on - strand, within SMa1084 at 592.095 kb on - strand, within SMa1084 at 592.095 kb on - strand, within SMa1084 at 592.095 kb on - strand, within SMa1084 at 592.095 kb on - strand, within SMa1084 at 592.242 kb on + strand, within SMa1084 at 592.242 kb on + strand, within SMa1084 at 592.243 kb on - strand, within SMa1084 at 592.299 kb on - strand, within SMa1084 at 592.305 kb on + strand, within SMa1084 at 592.306 kb on - strand, within SMa1084 at 592.306 kb on - strand, within SMa1084 at 592.306 kb on - strand, within SMa1084 at 592.405 kb on + strand, within SMa1084 at 592.406 kb on - strand, within SMa1084 at 592.455 kb on + strand, within SMa1084 at 592.455 kb on + strand, within SMa1084 at 592.639 kb on + strand, within SMa1084 at 592.702 kb on + strand, within SMa1084 at 592.984 kb on - strand, within SMa1084 at 592.993 kb on + strand, within SMa1084 at 593.073 kb on + strand, within SMa1084 at 593.074 kb on - strand, within SMa1084 at 593.142 kb on + strand, within SMa1084 at 593.143 kb on - strand, within SMa1084 at 593.158 kb on - strand, within SMa1084 at 593.205 kb on + strand at 593.206 kb on - strand at 593.206 kb on - strand at 593.212 kb on + strand at 593.212 kb on + strand at 593.253 kb on + strand at 593.254 kb on - strand at 593.306 kb on - strand at 593.306 kb on - strand at 593.431 kb on + strand at 593.431 kb on + strand at 593.432 kb on - strand at 593.553 kb on + strand at 593.616 kb on - strand at 593.616 kb on - strand at 593.652 kb on + strand at 593.653 kb on - strand at 593.955 kb on + strand, within SMa1086 at 593.956 kb on - strand, within SMa1086 at 594.051 kb on + strand, within SMa1086 at 594.051 kb on + strand, within SMa1086 at 594.052 kb on - strand, within SMa1086 at 594.185 kb on - strand, within SMa1086 at 594.199 kb on + strand at 594.200 kb on - strand, within SMa1086 at 594.276 kb on + strand at 594.276 kb on + strand at 594.279 kb on + strand at 594.280 kb on - strand at 594.298 kb on - strand at 594.326 kb on - strand at 594.422 kb on + strand at 594.422 kb on + strand at 594.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 590,113 + +0.9 590,114 - -0.9 590,114 - -0.2 590,172 + -0.0 590,172 + -0.6 590,173 - -0.7 590,173 - +0.1 590,352 - -0.6 590,352 - +0.5 590,352 - +0.6 590,377 + -0.1 590,377 + +0.1 590,378 - -0.1 590,423 + SMa1082 0.12 +0.4 590,424 - SMa1082 0.12 -0.0 590,456 - SMa1082 0.17 -1.2 590,571 + SMa1082 0.36 +0.4 590,583 + SMa1082 0.38 -0.2 590,583 + SMa1082 0.38 +0.4 590,584 - SMa1082 0.38 -0.1 590,584 - SMa1082 0.38 +0.4 590,584 - SMa1082 0.38 +0.1 590,802 + SMa1082 0.73 -1.0 590,802 + SMa1082 0.73 +0.3 590,928 + +0.1 591,012 + -0.4 591,012 + +1.7 591,032 - +3.0 591,142 - +0.1 591,142 - -0.2 591,142 - +1.0 591,306 + SMa1084 0.10 -1.0 591,307 - SMa1084 0.10 +0.3 591,345 + SMa1084 0.12 -0.1 591,346 - SMa1084 0.12 +0.2 591,718 - SMa1084 0.27 +0.2 591,760 + SMa1084 0.29 +0.2 591,760 + SMa1084 0.29 -0.1 591,884 + SMa1084 0.34 +1.0 591,884 + SMa1084 0.34 +0.4 591,884 + SMa1084 0.34 -0.0 591,885 - SMa1084 0.35 +0.4 591,889 - SMa1084 0.35 +0.0 591,889 - +3.0 591,889 - SMa1084 0.35 -1.4 591,964 + SMa1084 0.38 +0.1 591,965 - SMa1084 0.38 +0.0 591,994 - SMa1084 0.39 -1.3 591,994 - SMa1084 0.39 +0.1 591,994 - SMa1084 0.39 +0.4 592,095 - SMa1084 0.43 -0.9 592,095 - SMa1084 0.43 +1.2 592,095 - SMa1084 0.43 +0.1 592,095 - SMa1084 0.43 -1.8 592,242 + SMa1084 0.50 +0.2 592,242 + SMa1084 0.50 -0.0 592,243 - SMa1084 0.50 +0.2 592,299 - SMa1084 0.52 +0.2 592,305 + SMa1084 0.52 +0.7 592,306 - SMa1084 0.52 -0.7 592,306 - SMa1084 0.52 +0.1 592,306 - SMa1084 0.52 +0.2 592,405 + SMa1084 0.56 -0.6 592,406 - SMa1084 0.56 +0.6 592,455 + SMa1084 0.59 -0.2 592,455 + SMa1084 0.59 -0.6 592,639 + SMa1084 0.66 +0.8 592,702 + SMa1084 0.69 -1.8 592,984 - SMa1084 0.81 +0.0 592,993 + SMa1084 0.81 +0.2 593,073 + SMa1084 0.85 +0.5 593,074 - SMa1084 0.85 +0.7 593,142 + SMa1084 0.87 +0.7 593,143 - SMa1084 0.87 +0.1 593,158 - SMa1084 0.88 -0.0 593,205 + +0.5 593,206 - +0.3 593,206 - -0.4 593,212 + +1.4 593,212 + +1.1 593,253 + -0.0 593,254 - +0.7 593,306 - -0.1 593,306 - +1.5 593,431 + +0.7 593,431 + -0.9 593,432 - -0.4 593,553 + -0.0 593,616 - +0.7 593,616 - +0.6 593,652 + +0.9 593,653 - -2.1 593,955 + SMa1086 0.50 -0.7 593,956 - SMa1086 0.50 -0.5 594,051 + SMa1086 0.64 +0.2 594,051 + SMa1086 0.64 +0.5 594,052 - SMa1086 0.64 -0.3 594,185 - SMa1086 0.84 +0.3 594,199 + +0.4 594,200 - SMa1086 0.86 +0.1 594,276 + +0.5 594,276 + +0.4 594,279 + +0.4 594,280 - +0.4 594,298 - -0.9 594,326 - -0.4 594,422 + -0.4 594,422 + +0.6 594,423 - -0.8
Or see this region's nucleotide sequence