Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21273

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21272 and SM_b21273 overlap by 4 nucleotidesSM_b21273 and SM_b21274 are separated by 16 nucleotidesSM_b21274 and SM_b21275 overlap by 4 nucleotides SM_b21272: SM_b21272 - LacI family transcriptional regulator, at 845,977 to 847,047 _b21272 SM_b21273: SM_b21273 - spermidineputrescine ABC transporter substrate-binding protein precursor, at 847,044 to 848,066 _b21273 SM_b21274: SM_b21274 - spermidine/putrescine ABC transporter permease, at 848,083 to 848,982 _b21274 SM_b21275: SM_b21275 - spermidineputrescine ABC transporter permease, at 848,979 to 849,758 _b21275 Position (kb) 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2at 846.532 kb on - strand, within SM_b21272at 846.532 kb on - strand, within SM_b21272at 846.835 kb on - strand, within SM_b21272at 846.835 kb on - strand, within SM_b21272at 846.835 kb on - strand, within SM_b21272at 846.948 kb on + strandat 846.948 kb on + strandat 846.948 kb on + strandat 846.949 kb on - strandat 846.949 kb on - strandat 846.949 kb on - strandat 847.014 kb on - strandat 847.122 kb on - strandat 847.122 kb on - strandat 847.134 kb on + strandat 847.170 kb on + strand, within SM_b21273at 847.170 kb on + strand, within SM_b21273at 847.343 kb on + strand, within SM_b21273at 847.344 kb on - strand, within SM_b21273at 847.374 kb on + strand, within SM_b21273at 847.420 kb on - strand, within SM_b21273at 847.446 kb on + strand, within SM_b21273at 847.446 kb on + strand, within SM_b21273at 847.587 kb on - strand, within SM_b21273at 847.962 kb on + strand, within SM_b21273at 847.962 kb on + strand, within SM_b21273at 847.963 kb on - strand, within SM_b21273at 847.963 kb on - strand, within SM_b21273at 848.120 kb on - strandat 848.120 kb on - strandat 848.151 kb on - strandat 848.468 kb on + strand, within SM_b21274at 848.488 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.800 kb on + strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.801 kb on - strand, within SM_b21274at 848.802 kb on + strand, within SM_b21274at 848.802 kb on + strand, within SM_b21274

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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846,532 - SM_b21272 0.52 +0.1
846,532 - SM_b21272 0.52 +0.5
846,835 - SM_b21272 0.80 +0.4
846,835 - SM_b21272 0.80 +0.4
846,835 - SM_b21272 0.80 +0.2
846,948 + +0.2
846,948 + -0.8
846,948 + +2.0
846,949 - +0.6
846,949 - +0.4
846,949 - -0.0
847,014 - +0.5
847,122 - +0.9
847,122 - -0.6
847,134 + +0.4
847,170 + SM_b21273 0.12 -0.3
847,170 + SM_b21273 0.12 +0.3
847,343 + SM_b21273 0.29 -0.1
847,344 - SM_b21273 0.29 +0.1
847,374 + SM_b21273 0.32 +1.4
847,420 - SM_b21273 0.37 -0.0
847,446 + SM_b21273 0.39 +0.4
847,446 + SM_b21273 0.39 -1.3
847,587 - SM_b21273 0.53 +0.2
847,962 + SM_b21273 0.90 +1.6
847,962 + SM_b21273 0.90 +0.7
847,963 - SM_b21273 0.90 +1.1
847,963 - SM_b21273 0.90 +0.3
848,120 - +0.3
848,120 - -0.0
848,151 - +1.7
848,468 + SM_b21274 0.43 -0.1
848,488 + SM_b21274 0.45 -1.0
848,800 + SM_b21274 0.80 +0.2
848,800 + SM_b21274 0.80 -1.8
848,800 + SM_b21274 0.80 -0.4
848,800 + SM_b21274 0.80 +0.8
848,801 - SM_b21274 0.80 +0.2
848,801 - SM_b21274 0.80 -0.7
848,801 - SM_b21274 0.80 -0.1
848,801 - SM_b21274 0.80 +0.2
848,801 - SM_b21274 0.80 +0.5
848,801 - SM_b21274 0.80 +0.6
848,801 - SM_b21274 0.80 +0.2
848,801 - SM_b21274 0.80 +0.4
848,801 - SM_b21274 0.80 -0.1
848,801 - SM_b21274 0.80 +0.6
848,801 - SM_b21274 0.80 +0.0
848,802 + SM_b21274 0.80 -0.6
848,802 + SM_b21274 0.80 +0.4

Or see this region's nucleotide sequence