Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20711

Experiment: L-Lysine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20710 and SM_b20711 are separated by 202 nucleotidesSM_b20711 and SM_b20712 are separated by 239 nucleotides SM_b20710: SM_b20710 - dehydrogenase, at 1,512,188 to 1,513,075 _b20710 SM_b20711: SM_b20711 - hypothetical protein, at 1,513,278 to 1,514,090 _b20711 SM_b20712: SM_b20712 - rhizopine uptake ABC transporter substrate-binding protein precursor, at 1,514,330 to 1,515,259 _b20712 Position (kb) 1513 1514 1515Strain fitness (log2 ratio) -2 -1 0 1 2at 1512.535 kb on + strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.723 kb on + strand, within SM_b20710at 1512.724 kb on - strand, within SM_b20710at 1512.840 kb on - strand, within SM_b20710at 1512.840 kb on - strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.936 kb on - strand, within SM_b20710at 1513.025 kb on + strandat 1513.026 kb on - strandat 1513.033 kb on + strandat 1513.034 kb on - strandat 1513.034 kb on - strandat 1513.307 kb on + strandat 1513.307 kb on + strandat 1513.308 kb on - strandat 1513.308 kb on - strandat 1513.635 kb on - strand, within SM_b20711at 1513.983 kb on + strand, within SM_b20711at 1514.070 kb on + strandat 1514.070 kb on + strandat 1514.070 kb on + strandat 1514.463 kb on - strand, within SM_b20712at 1514.463 kb on - strand, within SM_b20712at 1514.463 kb on - strand, within SM_b20712at 1514.648 kb on + strand, within SM_b20712at 1514.648 kb on + strand, within SM_b20712at 1514.649 kb on - strand, within SM_b20712at 1514.649 kb on - strand, within SM_b20712at 1514.677 kb on + strand, within SM_b20712at 1514.678 kb on - strand, within SM_b20712at 1514.753 kb on - strand, within SM_b20712at 1514.753 kb on - strand, within SM_b20712

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (C)
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1,512,535 + SM_b20710 0.39 -0.0
1,512,536 - SM_b20710 0.39 +0.1
1,512,536 - SM_b20710 0.39 -0.1
1,512,536 - SM_b20710 0.39 +0.4
1,512,723 + SM_b20710 0.60 +0.5
1,512,724 - SM_b20710 0.60 +0.8
1,512,840 - SM_b20710 0.73 +0.2
1,512,840 - SM_b20710 0.73 -2.0
1,512,923 + SM_b20710 0.83 -2.3
1,512,923 + SM_b20710 0.83 -0.0
1,512,923 + SM_b20710 0.83 -0.2
1,512,923 + SM_b20710 0.83 -0.3
1,512,936 - SM_b20710 0.84 -1.3
1,513,025 + -0.3
1,513,026 - -0.1
1,513,033 + +0.3
1,513,034 - +0.0
1,513,034 - -0.3
1,513,307 + -0.6
1,513,307 + +0.9
1,513,308 - -0.3
1,513,308 - +0.1
1,513,635 - SM_b20711 0.44 +0.0
1,513,983 + SM_b20711 0.87 +0.8
1,514,070 + -0.3
1,514,070 + +0.2
1,514,070 + -0.4
1,514,463 - SM_b20712 0.14 -0.2
1,514,463 - SM_b20712 0.14 -1.2
1,514,463 - SM_b20712 0.14 +2.6
1,514,648 + SM_b20712 0.34 -0.8
1,514,648 + SM_b20712 0.34 +0.2
1,514,649 - SM_b20712 0.34 -0.3
1,514,649 - SM_b20712 0.34 -2.3
1,514,677 + SM_b20712 0.37 +0.6
1,514,678 - SM_b20712 0.37 +0.5
1,514,753 - SM_b20712 0.45 -0.4
1,514,753 - SM_b20712 0.45 +0.6

Or see this region's nucleotide sequence