Experiment: L-Lysine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20496 and SM_b20497 are separated by 8 nucleotides SM_b20497 and SM_b20498 are separated by 30 nucleotides SM_b20498 and SM_b20499 are separated by 66 nucleotides
SM_b20496: SM_b20496 - GMC oxidoreductase, at 515,354 to 516,964
_b20496
SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502
_b20497
SM_b20498: SM_b20498 - hypothetical protein, at 518,533 to 519,375
_b20498
SM_b20499: SM_b20499 - glycerol-3-phosphate dehydrogenase, at 519,442 to 521,175
_b20499
Position (kb) 516
517
518
519 Strain fitness (log2 ratio) -1
0
1
2 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.156 kb on - strand, within SM_b20496 at 516.386 kb on + strand, within SM_b20496 at 516.636 kb on + strand at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.790 kb on - strand, within SM_b20496 at 517.055 kb on + strand at 517.056 kb on - strand at 517.056 kb on - strand at 517.065 kb on - strand at 517.069 kb on - strand at 517.069 kb on - strand at 517.076 kb on + strand at 517.076 kb on + strand at 517.077 kb on - strand at 517.077 kb on - strand at 517.267 kb on + strand, within SM_b20497 at 517.421 kb on + strand, within SM_b20497 at 517.421 kb on + strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.466 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.476 kb on - strand, within SM_b20497 at 517.476 kb on - strand, within SM_b20497 at 517.628 kb on + strand, within SM_b20497 at 518.050 kb on - strand, within SM_b20497 at 518.138 kb on + strand, within SM_b20497 at 518.246 kb on + strand, within SM_b20497 at 518.246 kb on + strand, within SM_b20497 at 518.247 kb on - strand, within SM_b20497 at 518.247 kb on - strand, within SM_b20497 at 518.316 kb on + strand, within SM_b20497 at 518.316 kb on + strand, within SM_b20497 at 518.317 kb on - strand, within SM_b20497 at 518.317 kb on - strand, within SM_b20497 at 518.488 kb on + strand at 518.492 kb on + strand at 518.492 kb on + strand at 518.492 kb on + strand at 518.493 kb on - strand at 518.493 kb on - strand at 518.493 kb on - strand at 518.547 kb on - strand at 518.633 kb on + strand, within SM_b20498 at 518.633 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.648 kb on + strand, within SM_b20498 at 518.876 kb on + strand, within SM_b20498 at 518.876 kb on + strand, within SM_b20498 at 518.877 kb on - strand, within SM_b20498 at 518.918 kb on - strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 518.936 kb on + strand, within SM_b20498 at 519.119 kb on + strand, within SM_b20498 at 519.120 kb on - strand, within SM_b20498 at 519.363 kb on + strand at 519.364 kb on - strand at 519.377 kb on + strand at 519.378 kb on + strand at 519.379 kb on - strand at 519.379 kb on - strand at 519.462 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine (C) remove 516,010 - SM_b20496 0.41 -0.1 516,010 - SM_b20496 0.41 +0.5 516,010 - SM_b20496 0.41 -0.4 516,010 - SM_b20496 0.41 -0.1 516,010 - SM_b20496 0.41 +0.3 516,156 - SM_b20496 0.50 -0.6 516,386 + SM_b20496 0.64 -0.3 516,636 + +0.2 516,659 - SM_b20496 0.81 -0.2 516,659 - SM_b20496 0.81 +0.0 516,659 - SM_b20496 0.81 +0.1 516,659 - SM_b20496 0.81 +1.1 516,660 + SM_b20496 0.81 -0.2 516,660 + SM_b20496 0.81 +1.2 516,660 + SM_b20496 0.81 +0.0 516,661 - SM_b20496 0.81 +0.4 516,661 - SM_b20496 0.81 +0.7 516,661 - SM_b20496 0.81 +0.8 516,661 - SM_b20496 0.81 +2.2 516,790 - SM_b20496 0.89 -0.3 517,055 + -0.0 517,056 - -0.2 517,056 - +0.5 517,065 - +0.6 517,069 - -0.2 517,069 - -0.5 517,076 + -0.7 517,076 + +0.2 517,077 - -0.5 517,077 - +0.1 517,267 + SM_b20497 0.19 +0.1 517,421 + SM_b20497 0.29 +0.8 517,421 + SM_b20497 0.29 -0.8 517,422 - SM_b20497 0.29 +0.8 517,422 - SM_b20497 0.29 -1.2 517,422 - SM_b20497 0.29 +0.4 517,466 + SM_b20497 0.32 +0.9 517,475 + SM_b20497 0.33 -0.2 517,475 + SM_b20497 0.33 +0.4 517,475 + SM_b20497 0.33 +0.8 517,475 + SM_b20497 0.33 +0.5 517,475 + SM_b20497 0.33 +0.4 517,475 + SM_b20497 0.33 +1.0 517,476 - SM_b20497 0.33 +0.9 517,476 - SM_b20497 0.33 -0.2 517,628 + SM_b20497 0.43 +0.3 518,050 - SM_b20497 0.70 +1.1 518,138 + SM_b20497 0.76 +0.9 518,246 + SM_b20497 0.83 +0.1 518,246 + SM_b20497 0.83 +0.5 518,247 - SM_b20497 0.83 -0.5 518,247 - SM_b20497 0.83 -0.5 518,316 + SM_b20497 0.88 +0.8 518,316 + SM_b20497 0.88 -0.3 518,317 - SM_b20497 0.88 +0.0 518,317 - SM_b20497 0.88 +0.9 518,488 + +0.5 518,492 + +0.1 518,492 + +0.8 518,492 + +0.3 518,493 - +0.8 518,493 - +1.2 518,493 - +0.6 518,547 - -1.5 518,633 + SM_b20498 0.12 +1.1 518,633 + SM_b20498 0.12 +0.0 518,648 + SM_b20498 0.14 -0.3 518,648 + SM_b20498 0.14 +1.1 518,648 + SM_b20498 0.14 +0.5 518,876 + SM_b20498 0.41 -0.1 518,876 + SM_b20498 0.41 +0.3 518,877 - SM_b20498 0.41 +0.1 518,918 - SM_b20498 0.46 -0.2 518,936 + SM_b20498 0.48 -0.1 518,936 + SM_b20498 0.48 -0.5 518,936 + SM_b20498 0.48 -0.4 518,936 + SM_b20498 0.48 +0.5 519,119 + SM_b20498 0.70 -0.3 519,120 - SM_b20498 0.70 -1.1 519,363 + -0.1 519,364 - -0.1 519,377 + +0.2 519,378 + -0.1 519,379 - -0.4 519,379 - +0.0 519,462 + -0.8
Or see this region's nucleotide sequence