Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23855

Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23850 and RS_RS23855 are separated by 240 nucleotidesRS_RS23855 and RS_RS23860 are separated by 22 nucleotides RS_RS23850: RS_RS23850 - flagellar type III secretion system protein FlhB, at 1,756,300 to 1,757,463 _RS23850 RS_RS23855: RS_RS23855 - TetR/AcrR family transcriptional regulator, at 1,757,704 to 1,758,378 _RS23855 RS_RS23860: RS_RS23860 - MFS transporter, at 1,758,401 to 1,759,726 _RS23860 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -2 -1 0 1at 1756.821 kb on - strand, within RS_RS23850at 1756.821 kb on - strand, within RS_RS23850at 1756.821 kb on - strand, within RS_RS23850at 1757.223 kb on - strand, within RS_RS23850at 1757.249 kb on + strand, within RS_RS23850at 1757.249 kb on + strand, within RS_RS23850at 1757.250 kb on - strand, within RS_RS23850at 1757.688 kb on + strandat 1757.878 kb on + strand, within RS_RS23855at 1757.879 kb on - strand, within RS_RS23855at 1757.879 kb on - strand, within RS_RS23855at 1757.882 kb on - strand, within RS_RS23855at 1757.884 kb on + strand, within RS_RS23855at 1757.884 kb on + strand, within RS_RS23855at 1757.884 kb on + strand, within RS_RS23855at 1757.885 kb on - strand, within RS_RS23855at 1757.908 kb on + strand, within RS_RS23855at 1757.908 kb on + strand, within RS_RS23855at 1757.909 kb on - strand, within RS_RS23855at 1757.909 kb on - strand, within RS_RS23855at 1757.909 kb on - strand, within RS_RS23855at 1757.909 kb on - strand, within RS_RS23855at 1757.909 kb on - strand, within RS_RS23855at 1757.933 kb on - strand, within RS_RS23855at 1758.025 kb on + strand, within RS_RS23855at 1758.346 kb on + strandat 1758.346 kb on + strandat 1758.522 kb on + strandat 1758.523 kb on - strandat 1758.849 kb on + strand, within RS_RS23860at 1758.849 kb on + strand, within RS_RS23860at 1758.849 kb on + strand, within RS_RS23860at 1758.849 kb on + strand, within RS_RS23860at 1758.850 kb on - strand, within RS_RS23860at 1758.850 kb on - strand, within RS_RS23860at 1758.901 kb on - strand, within RS_RS23860at 1758.901 kb on - strand, within RS_RS23860at 1758.930 kb on + strand, within RS_RS23860at 1758.930 kb on + strand, within RS_RS23860at 1758.937 kb on - strand, within RS_RS23860at 1759.056 kb on + strand, within RS_RS23860at 1759.104 kb on + strand, within RS_RS23860at 1759.104 kb on + strand, within RS_RS23860at 1759.105 kb on - strand, within RS_RS23860at 1759.105 kb on - strand, within RS_RS23860at 1759.312 kb on - strand, within RS_RS23860at 1759.312 kb on - strand, within RS_RS23860at 1759.312 kb on - strand, within RS_RS23860

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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1,756,821 - RS_RS23850 0.45 +0.3
1,756,821 - RS_RS23850 0.45 +0.2
1,756,821 - RS_RS23850 0.45 +0.4
1,757,223 - RS_RS23850 0.79 -0.3
1,757,249 + RS_RS23850 0.82 +0.0
1,757,249 + RS_RS23850 0.82 -0.2
1,757,250 - RS_RS23850 0.82 -1.1
1,757,688 + +0.2
1,757,878 + RS_RS23855 0.26 +0.1
1,757,879 - RS_RS23855 0.26 +1.2
1,757,879 - RS_RS23855 0.26 -0.1
1,757,882 - RS_RS23855 0.26 +1.4
1,757,884 + RS_RS23855 0.27 -0.1
1,757,884 + RS_RS23855 0.27 +0.2
1,757,884 + RS_RS23855 0.27 +0.5
1,757,885 - RS_RS23855 0.27 +1.2
1,757,908 + RS_RS23855 0.30 -0.3
1,757,908 + RS_RS23855 0.30 -0.4
1,757,909 - RS_RS23855 0.30 +0.1
1,757,909 - RS_RS23855 0.30 -0.1
1,757,909 - RS_RS23855 0.30 -0.4
1,757,909 - RS_RS23855 0.30 +0.1
1,757,909 - RS_RS23855 0.30 -0.5
1,757,933 - RS_RS23855 0.34 +0.0
1,758,025 + RS_RS23855 0.48 +1.2
1,758,346 + +0.1
1,758,346 + +0.2
1,758,522 + +1.4
1,758,523 - -0.3
1,758,849 + RS_RS23860 0.34 -0.5
1,758,849 + RS_RS23860 0.34 -0.1
1,758,849 + RS_RS23860 0.34 +1.6
1,758,849 + RS_RS23860 0.34 -1.0
1,758,850 - RS_RS23860 0.34 +0.3
1,758,850 - RS_RS23860 0.34 +1.6
1,758,901 - RS_RS23860 0.38 -2.1
1,758,901 - RS_RS23860 0.38 +1.0
1,758,930 + RS_RS23860 0.40 +0.2
1,758,930 + RS_RS23860 0.40 +0.3
1,758,937 - RS_RS23860 0.40 -0.4
1,759,056 + RS_RS23860 0.49 -0.5
1,759,104 + RS_RS23860 0.53 -1.0
1,759,104 + RS_RS23860 0.53 +0.5
1,759,105 - RS_RS23860 0.53 +0.4
1,759,105 - RS_RS23860 0.53 -0.3
1,759,312 - RS_RS23860 0.69 +0.1
1,759,312 - RS_RS23860 0.69 -0.4
1,759,312 - RS_RS23860 0.69 -0.4

Or see this region's nucleotide sequence