Experiment: water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18350 and RS_RS18355 are separated by 39 nucleotides RS_RS18355 and RS_RS18360 are separated by 103 nucleotides RS_RS18360 and RS_RS18365 overlap by 4 nucleotides RS_RS18365 and RS_RS18370 are separated by 39 nucleotides RS_RS18370 and RS_RS18375 are separated by 354 nucleotides
RS_RS18350: RS_RS18350 - hypothetical protein, at 321,762 to 322,007
_RS18350
RS_RS18355: RS_RS18355 - hypothetical protein, at 322,047 to 322,352
_RS18355
RS_RS18360: RS_RS18360 - hypothetical protein, at 322,456 to 322,773
_RS18360
RS_RS18365: RS_RS18365 - ferrous iron transport protein B, at 322,770 to 324,635
_RS18365
RS_RS18370: RS_RS18370 - iron transporter FeoA, at 324,675 to 324,986
_RS18370
RS_RS18375: RS_RS18375 - PAS domain S-box protein, at 325,341 to 327,791
_RS18375
Position (kb)
322
323
324
325 Strain fitness (log2 ratio)
-1
0
1
2 at 321.991 kb on - strand at 321.991 kb on - strand at 322.375 kb on - strand at 322.385 kb on + strand at 322.386 kb on - strand at 325.009 kb on - strand at 325.014 kb on - strand at 325.014 kb on - strand at 325.014 kb on - strand at 325.014 kb on - strand at 325.018 kb on - strand at 325.018 kb on - strand at 325.018 kb on - strand at 325.018 kb on - strand at 325.018 kb on - strand at 325.101 kb on + strand at 325.126 kb on + strand at 325.126 kb on + strand at 325.126 kb on + strand at 325.126 kb on + strand at 325.127 kb on - strand at 325.127 kb on - strand at 325.127 kb on - strand at 325.127 kb on - strand at 325.127 kb on - strand at 325.194 kb on + strand at 325.194 kb on + strand at 325.194 kb on + strand at 325.195 kb on - strand at 325.195 kb on - strand at 325.195 kb on - strand at 325.235 kb on - strand at 325.235 kb on - strand at 325.271 kb on + strand at 325.291 kb on - strand at 325.293 kb on + strand at 325.293 kb on + strand at 325.296 kb on + strand at 325.296 kb on + strand at 325.330 kb on - strand at 325.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days remove 321,991 - -0.2 321,991 - +0.1 322,375 - +0.2 322,385 + +0.1 322,386 - +0.9 325,009 - +0.5 325,014 - -0.5 325,014 - -0.1 325,014 - +0.3 325,014 - +2.7 325,018 - +2.7 325,018 - +0.0 325,018 - +0.4 325,018 - -1.3 325,018 - -0.7 325,101 + +0.2 325,126 + -0.1 325,126 + +0.3 325,126 + -0.7 325,126 + -0.3 325,127 - -0.0 325,127 - -0.5 325,127 - +0.3 325,127 - +0.0 325,127 - -1.2 325,194 + -1.1 325,194 + -1.1 325,194 + -0.7 325,195 - -0.8 325,195 - +1.1 325,195 - +1.1 325,235 - -1.1 325,235 - -0.2 325,271 + -1.2 325,291 - -0.2 325,293 + -0.2 325,293 + +0.0 325,296 + -0.5 325,296 + -0.5 325,330 - +0.1 325,450 - +0.0
Or see this region's nucleotide sequence