Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33740

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt AZOBR_RS33740: AZOBR_RS33740 - hypothetical protein, at 99,200 to 99,931 _RS33740 Position (kb) 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 98.250 kb on + strandat 98.250 kb on + strandat 98.250 kb on + strandat 98.589 kb on + strandat 99.228 kb on + strandat 99.333 kb on + strand, within AZOBR_RS33740at 99.333 kb on + strand, within AZOBR_RS33740at 99.395 kb on - strand, within AZOBR_RS33740at 99.468 kb on + strand, within AZOBR_RS33740at 99.757 kb on - strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.847 kb on + strand, within AZOBR_RS33740at 99.848 kb on - strand, within AZOBR_RS33740at 100.725 kb on + strandat 100.726 kb on - strandat 100.726 kb on - strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.854 kb on - strandat 100.854 kb on - strandat 100.867 kb on + strandat 100.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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98,250 + +0.5
98,250 + -0.5
98,250 + -2.3
98,589 + -0.2
99,228 + +0.8
99,333 + AZOBR_RS33740 0.18 -1.2
99,333 + AZOBR_RS33740 0.18 -2.1
99,395 - AZOBR_RS33740 0.27 +0.8
99,468 + AZOBR_RS33740 0.37 -0.4
99,757 - AZOBR_RS33740 0.76 -0.1
99,847 + AZOBR_RS33740 0.88 +0.2
99,847 + AZOBR_RS33740 0.88 -0.7
99,847 + AZOBR_RS33740 0.88 -1.5
99,847 + AZOBR_RS33740 0.88 +0.4
99,848 - AZOBR_RS33740 0.89 -0.4
100,725 + +0.1
100,726 - -0.2
100,726 - -1.4
100,853 + +0.9
100,853 + -0.0
100,853 + -1.0
100,853 + +1.8
100,853 + -0.0
100,854 - -1.6
100,854 - -0.6
100,867 + -0.0
100,867 + +0.5

Or see this region's nucleotide sequence