Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32525

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32520 and AZOBR_RS32525 are separated by 179 nucleotidesAZOBR_RS32525 and AZOBR_RS32530 are separated by 444 nucleotides AZOBR_RS32520: AZOBR_RS32520 - chromosome partitioning protein, at 661,602 to 662,624 _RS32520 AZOBR_RS32525: AZOBR_RS32525 - hypothetical protein, at 662,804 to 663,028 _RS32525 AZOBR_RS32530: AZOBR_RS32530 - hypothetical protein, at 663,473 to 664,573 _RS32530 Position (kb) 662 663 664Strain fitness (log2 ratio) -2 -1 0 1at 662.752 kb on + strandat 662.752 kb on + strandat 662.753 kb on - strandat 663.073 kb on + strandat 663.107 kb on - strandat 663.114 kb on - strandat 663.114 kb on - strandat 663.149 kb on - strandat 663.208 kb on + strandat 663.209 kb on - strandat 663.236 kb on + strandat 663.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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662,752 + -2.3
662,752 + -1.0
662,753 - +1.0
663,073 + -1.1
663,107 - -0.0
663,114 - -0.1
663,114 - +1.6
663,149 - -1.6
663,208 + -0.3
663,209 - -0.6
663,236 + +1.1
663,473 - +0.6

Or see this region's nucleotide sequence