Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29935

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29925 and AZOBR_RS29930 are separated by 125 nucleotidesAZOBR_RS29930 and AZOBR_RS29935 are separated by 20 nucleotidesAZOBR_RS29935 and AZOBR_RS29940 are separated by 13 nucleotidesAZOBR_RS29940 and AZOBR_RS29945 are separated by 147 nucleotidesAZOBR_RS29945 and AZOBR_RS29950 are separated by 1 nucleotides AZOBR_RS29925: AZOBR_RS29925 - ATP synthase, at 57,119 to 58,459 _RS29925 AZOBR_RS29930: AZOBR_RS29930 - flagellar basal body rod protein FlgG, at 58,585 to 58,977 _RS29930 AZOBR_RS29935: AZOBR_RS29935 - flagellar basal-body rod protein FlgC, at 58,998 to 59,417 _RS29935 AZOBR_RS29940: AZOBR_RS29940 - flagellar basal body protein FliE, at 59,431 to 59,793 _RS29940 AZOBR_RS29945: AZOBR_RS29945 - flagellar biosynthesis protein FliQ, at 59,941 to 60,207 _RS29945 AZOBR_RS29950: AZOBR_RS29950 - transglycosylase, at 60,209 to 60,979 _RS29950 Position (kb) 58 59 60Strain fitness (log2 ratio) -1 0 1 2at 58.636 kb on + strand, within AZOBR_RS29930at 58.637 kb on - strand, within AZOBR_RS29930at 59.277 kb on + strand, within AZOBR_RS29935at 59.277 kb on + strand, within AZOBR_RS29935at 59.765 kb on - strandat 59.929 kb on - strandat 60.148 kb on + strand, within AZOBR_RS29945at 60.148 kb on + strand, within AZOBR_RS29945at 60.149 kb on - strand, within AZOBR_RS29945at 60.149 kb on - strand, within AZOBR_RS29945at 60.166 kb on + strand, within AZOBR_RS29945at 60.167 kb on - strand, within AZOBR_RS29945

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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58,636 + AZOBR_RS29930 0.13 +0.5
58,637 - AZOBR_RS29930 0.13 +1.4
59,277 + AZOBR_RS29935 0.66 +1.0
59,277 + AZOBR_RS29935 0.66 +0.4
59,765 - -0.2
59,929 - -0.6
60,148 + AZOBR_RS29945 0.78 -0.6
60,148 + AZOBR_RS29945 0.78 -1.0
60,149 - AZOBR_RS29945 0.78 +1.6
60,149 - AZOBR_RS29945 0.78 +2.6
60,166 + AZOBR_RS29945 0.84 +0.0
60,167 - AZOBR_RS29945 0.85 +0.5

Or see this region's nucleotide sequence