Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29400 and AZOBR_RS29405 are separated by 17 nucleotides AZOBR_RS29405 and AZOBR_RS29410 overlap by 19 nucleotides AZOBR_RS29410 and AZOBR_RS29415 are separated by 71 nucleotides AZOBR_RS29415 and AZOBR_RS29420 overlap by 4 nucleotides
AZOBR_RS29400: AZOBR_RS29400 - taurine ABC transporter permease, at 717,597 to 718,436
_RS29400
AZOBR_RS29405: AZOBR_RS29405 - ATP-binding protein, at 718,454 to 719,296
_RS29405
AZOBR_RS29410: AZOBR_RS29410 - sulfonate ABC transporter substrate-binding protein, at 719,278 to 720,351
_RS29410
AZOBR_RS29415: AZOBR_RS29415 - hypothetical protein, at 720,423 to 721,124
_RS29415
AZOBR_RS29420: AZOBR_RS29420 - nitrilase, at 721,121 to 722,050
_RS29420
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 718.778 kb on + strand, within AZOBR_RS29405 at 718.778 kb on + strand, within AZOBR_RS29405 at 718.779 kb on - strand, within AZOBR_RS29405 at 718.779 kb on - strand, within AZOBR_RS29405 at 718.916 kb on + strand, within AZOBR_RS29405 at 719.719 kb on + strand, within AZOBR_RS29410 at 719.719 kb on + strand, within AZOBR_RS29410 at 719.872 kb on + strand, within AZOBR_RS29410 at 719.872 kb on + strand, within AZOBR_RS29410 at 719.873 kb on - strand, within AZOBR_RS29410 at 719.873 kb on - strand, within AZOBR_RS29410 at 720.029 kb on - strand, within AZOBR_RS29410 at 720.029 kb on - strand, within AZOBR_RS29410 at 720.128 kb on - strand, within AZOBR_RS29410 at 720.430 kb on + strand at 720.431 kb on - strand at 720.431 kb on - strand at 720.588 kb on + strand, within AZOBR_RS29415 at 720.588 kb on + strand, within AZOBR_RS29415 at 721.341 kb on - strand, within AZOBR_RS29420
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 718,778 + AZOBR_RS29405 0.38 -0.5 718,778 + AZOBR_RS29405 0.38 +1.7 718,779 - AZOBR_RS29405 0.39 +4.0 718,779 - AZOBR_RS29405 0.39 +1.0 718,916 + AZOBR_RS29405 0.55 -0.5 719,719 + AZOBR_RS29410 0.41 +1.3 719,719 + AZOBR_RS29410 0.41 +2.7 719,872 + AZOBR_RS29410 0.55 +0.0 719,872 + AZOBR_RS29410 0.55 +2.7 719,873 - AZOBR_RS29410 0.55 -0.1 719,873 - AZOBR_RS29410 0.55 +0.4 720,029 - AZOBR_RS29410 0.70 -3.7 720,029 - AZOBR_RS29410 0.70 +0.4 720,128 - AZOBR_RS29410 0.79 +0.7 720,430 + -1.3 720,431 - +1.7 720,431 - -1.1 720,588 + AZOBR_RS29415 0.24 -0.9 720,588 + AZOBR_RS29415 0.24 +0.1 721,341 - AZOBR_RS29420 0.24 +1.3
Or see this region's nucleotide sequence