Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS29185

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS29180 and AZOBR_RS29185 are separated by 63 nucleotidesAZOBR_RS29185 and AZOBR_RS29190 are separated by 86 nucleotides AZOBR_RS29180: AZOBR_RS29180 - CoA-transferase, at 672,419 to 673,660 _RS29180 AZOBR_RS29185: AZOBR_RS29185 - aldehyde dehydrogenase, at 673,724 to 675,160 _RS29185 AZOBR_RS29190: AZOBR_RS29190 - hydroxyacid dehydrogenase, at 675,247 to 676,149 _RS29190 Position (kb) 673 674 675 676Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 672.800 kb on + strand, within AZOBR_RS29180at 672.801 kb on - strand, within AZOBR_RS29180at 672.836 kb on + strand, within AZOBR_RS29180at 672.836 kb on + strand, within AZOBR_RS29180at 672.836 kb on + strand, within AZOBR_RS29180at 672.854 kb on + strand, within AZOBR_RS29180at 672.974 kb on + strand, within AZOBR_RS29180at 672.974 kb on + strand, within AZOBR_RS29180at 672.975 kb on - strand, within AZOBR_RS29180at 673.532 kb on + strand, within AZOBR_RS29180at 673.823 kb on + strandat 673.824 kb on - strandat 674.051 kb on + strand, within AZOBR_RS29185at 674.204 kb on + strand, within AZOBR_RS29185at 674.205 kb on - strand, within AZOBR_RS29185at 674.789 kb on + strand, within AZOBR_RS29185at 674.789 kb on + strand, within AZOBR_RS29185at 674.790 kb on - strand, within AZOBR_RS29185at 675.038 kb on + strandat 675.038 kb on + strandat 675.038 kb on + strandat 675.135 kb on - strandat 675.212 kb on + strandat 675.212 kb on + strandat 675.213 kb on - strandat 675.213 kb on - strandat 675.776 kb on - strand, within AZOBR_RS29190at 675.776 kb on - strand, within AZOBR_RS29190at 676.069 kb on + strandat 676.070 kb on - strandat 676.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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672,800 + AZOBR_RS29180 0.31 +0.8
672,801 - AZOBR_RS29180 0.31 +1.4
672,836 + AZOBR_RS29180 0.34 +5.0
672,836 + AZOBR_RS29180 0.34 -1.0
672,836 + AZOBR_RS29180 0.34 +2.9
672,854 + AZOBR_RS29180 0.35 +1.7
672,974 + AZOBR_RS29180 0.45 +0.5
672,974 + AZOBR_RS29180 0.45 +2.7
672,975 - AZOBR_RS29180 0.45 +1.4
673,532 + AZOBR_RS29180 0.90 -0.8
673,823 + +0.3
673,824 - +3.0
674,051 + AZOBR_RS29185 0.23 +0.7
674,204 + AZOBR_RS29185 0.33 +2.7
674,205 - AZOBR_RS29185 0.33 +0.1
674,789 + AZOBR_RS29185 0.74 +0.2
674,789 + AZOBR_RS29185 0.74 -0.6
674,790 - AZOBR_RS29185 0.74 -0.4
675,038 + +1.4
675,038 + +0.7
675,038 + +2.7
675,135 - +0.4
675,212 + +0.8
675,212 + -0.3
675,213 - -0.6
675,213 - +2.3
675,776 - AZOBR_RS29190 0.59 +2.7
675,776 - AZOBR_RS29190 0.59 -1.0
676,069 + +0.3
676,070 - +1.4
676,103 - -0.6

Or see this region's nucleotide sequence