Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28360 and AZOBR_RS28365 are separated by 44 nucleotides AZOBR_RS28365 and AZOBR_RS28370 overlap by 4 nucleotides
AZOBR_RS28360: AZOBR_RS28360 - radical SAM protein, at 535,348 to 536,655
_RS28360
AZOBR_RS28365: AZOBR_RS28365 - glycosyl transferase family 1, at 536,700 to 537,794
_RS28365
AZOBR_RS28370: AZOBR_RS28370 - hypothetical protein, at 537,791 to 538,915
_RS28370
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1 at 535.999 kb on + strand, within AZOBR_RS28360 at 535.999 kb on + strand, within AZOBR_RS28360 at 536.000 kb on - strand, within AZOBR_RS28360 at 536.000 kb on - strand, within AZOBR_RS28360 at 536.108 kb on - strand, within AZOBR_RS28360 at 536.108 kb on - strand, within AZOBR_RS28360 at 536.486 kb on - strand, within AZOBR_RS28360 at 536.486 kb on - strand, within AZOBR_RS28360 at 536.486 kb on - strand, within AZOBR_RS28360 at 536.567 kb on - strand at 536.733 kb on + strand at 536.734 kb on - strand at 537.181 kb on - strand, within AZOBR_RS28365 at 537.480 kb on + strand, within AZOBR_RS28365 at 537.986 kb on + strand, within AZOBR_RS28370 at 538.208 kb on + strand, within AZOBR_RS28370 at 538.208 kb on + strand, within AZOBR_RS28370 at 538.209 kb on - strand, within AZOBR_RS28370 at 538.209 kb on - strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.449 kb on - strand, within AZOBR_RS28370 at 538.505 kb on + strand, within AZOBR_RS28370 at 538.505 kb on + strand, within AZOBR_RS28370 at 538.505 kb on + strand, within AZOBR_RS28370 at 538.506 kb on - strand, within AZOBR_RS28370 at 538.506 kb on - strand, within AZOBR_RS28370 at 538.586 kb on + strand, within AZOBR_RS28370 at 538.733 kb on - strand, within AZOBR_RS28370
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 535,999 + AZOBR_RS28360 0.50 -1.1 535,999 + AZOBR_RS28360 0.50 -0.5 536,000 - AZOBR_RS28360 0.50 +1.6 536,000 - AZOBR_RS28360 0.50 +1.6 536,108 - AZOBR_RS28360 0.58 +0.5 536,108 - AZOBR_RS28360 0.58 +0.3 536,486 - AZOBR_RS28360 0.87 -0.9 536,486 - AZOBR_RS28360 0.87 +0.1 536,486 - AZOBR_RS28360 0.87 -0.7 536,567 - -2.0 536,733 + +0.8 536,734 - -0.5 537,181 - AZOBR_RS28365 0.44 -0.8 537,480 + AZOBR_RS28365 0.71 -1.8 537,986 + AZOBR_RS28370 0.17 -0.2 538,208 + AZOBR_RS28370 0.37 -0.4 538,208 + AZOBR_RS28370 0.37 +0.5 538,209 - AZOBR_RS28370 0.37 +1.6 538,209 - AZOBR_RS28370 0.37 -0.9 538,448 + AZOBR_RS28370 0.58 +0.0 538,448 + AZOBR_RS28370 0.58 -1.9 538,448 + AZOBR_RS28370 0.58 +0.9 538,448 + AZOBR_RS28370 0.58 -0.2 538,449 - AZOBR_RS28370 0.58 -0.2 538,505 + AZOBR_RS28370 0.63 -0.8 538,505 + AZOBR_RS28370 0.63 +0.6 538,505 + AZOBR_RS28370 0.63 +1.6 538,506 - AZOBR_RS28370 0.64 -0.5 538,506 - AZOBR_RS28370 0.64 -0.1 538,586 + AZOBR_RS28370 0.71 -1.4 538,733 - AZOBR_RS28370 0.84 -0.2
Or see this region's nucleotide sequence