Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28340 and AZOBR_RS28345 are separated by 834 nucleotides AZOBR_RS28345 and AZOBR_RS28350 are separated by 8 nucleotides
AZOBR_RS28340: AZOBR_RS28340 - beta-xylosidase, at 530,416 to 531,342
_RS28340
AZOBR_RS28345: AZOBR_RS28345 - phosphoglycerate mutase, at 532,177 to 532,773
_RS28345
AZOBR_RS28350: AZOBR_RS28350 - inositol-3-phosphate synthase, at 532,782 to 533,885
_RS28350
Position (kb) 532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 531.487 kb on + strand at 531.487 kb on + strand at 531.487 kb on + strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.488 kb on - strand at 531.593 kb on - strand at 531.783 kb on + strand at 531.972 kb on + strand at 531.972 kb on + strand at 531.973 kb on - strand at 532.888 kb on + strand at 532.889 kb on - strand at 532.889 kb on - strand at 533.105 kb on + strand, within AZOBR_RS28350 at 533.106 kb on - strand, within AZOBR_RS28350 at 533.239 kb on + strand, within AZOBR_RS28350 at 533.239 kb on + strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.240 kb on - strand, within AZOBR_RS28350 at 533.389 kb on - strand, within AZOBR_RS28350 at 533.446 kb on + strand, within AZOBR_RS28350 at 533.446 kb on + strand, within AZOBR_RS28350 at 533.447 kb on - strand, within AZOBR_RS28350 at 533.447 kb on - strand, within AZOBR_RS28350 at 533.482 kb on + strand, within AZOBR_RS28350 at 533.483 kb on - strand, within AZOBR_RS28350 at 533.706 kb on + strand, within AZOBR_RS28350
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 531,487 + -0.3 531,487 + +2.1 531,487 + -1.2 531,488 - -0.2 531,488 - +0.1 531,488 - +0.2 531,488 - +0.1 531,488 - +1.6 531,488 - +0.9 531,488 - -0.8 531,593 - +2.6 531,783 + +0.6 531,972 + +0.2 531,972 + -0.1 531,973 - +0.6 532,888 + -0.3 532,889 - +0.4 532,889 - -1.0 533,105 + AZOBR_RS28350 0.29 -0.5 533,106 - AZOBR_RS28350 0.29 -0.5 533,239 + AZOBR_RS28350 0.41 -0.9 533,239 + AZOBR_RS28350 0.41 -1.3 533,240 - AZOBR_RS28350 0.41 -2.3 533,240 - AZOBR_RS28350 0.41 -0.3 533,240 - AZOBR_RS28350 0.41 -0.1 533,240 - AZOBR_RS28350 0.41 -0.6 533,240 - AZOBR_RS28350 0.41 -0.1 533,389 - AZOBR_RS28350 0.55 -1.3 533,446 + AZOBR_RS28350 0.60 -0.6 533,446 + AZOBR_RS28350 0.60 +0.3 533,447 - AZOBR_RS28350 0.60 +0.6 533,447 - AZOBR_RS28350 0.60 -0.8 533,482 + AZOBR_RS28350 0.63 -0.4 533,483 - AZOBR_RS28350 0.63 -0.9 533,706 + AZOBR_RS28350 0.84 -1.9
Or see this region's nucleotide sequence