Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28075 and AZOBR_RS28080 are separated by 121 nucleotides
AZOBR_RS28075: AZOBR_RS28075 - membrane protein, at 465,298 to 466,434
_RS28075
AZOBR_RS28080: AZOBR_RS28080 - GntR family transcriptional regulator, at 466,556 to 467,281
_RS28080
Position (kb) 466
467
468 Strain fitness (log2 ratio) -2
-1
0
1
2 at 465.569 kb on + strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.570 kb on - strand, within AZOBR_RS28075 at 465.623 kb on + strand, within AZOBR_RS28075 at 465.624 kb on - strand, within AZOBR_RS28075 at 465.624 kb on - strand, within AZOBR_RS28075 at 465.648 kb on - strand, within AZOBR_RS28075 at 465.806 kb on + strand, within AZOBR_RS28075 at 465.806 kb on + strand, within AZOBR_RS28075 at 465.807 kb on - strand, within AZOBR_RS28075 at 465.807 kb on - strand, within AZOBR_RS28075 at 465.932 kb on + strand, within AZOBR_RS28075 at 465.933 kb on - strand, within AZOBR_RS28075 at 465.933 kb on - strand, within AZOBR_RS28075 at 465.956 kb on + strand, within AZOBR_RS28075 at 465.957 kb on - strand, within AZOBR_RS28075 at 466.016 kb on + strand, within AZOBR_RS28075 at 466.017 kb on - strand, within AZOBR_RS28075 at 466.788 kb on + strand, within AZOBR_RS28080 at 467.440 kb on + strand at 467.441 kb on - strand at 467.444 kb on - strand at 467.627 kb on + strand at 467.688 kb on - strand at 467.688 kb on - strand at 467.688 kb on - strand at 467.840 kb on + strand at 467.877 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 465,569 + AZOBR_RS28075 0.24 +0.9 465,570 - AZOBR_RS28075 0.24 -1.6 465,570 - AZOBR_RS28075 0.24 -0.9 465,570 - AZOBR_RS28075 0.24 +1.8 465,570 - AZOBR_RS28075 0.24 -1.5 465,570 - AZOBR_RS28075 0.24 -0.3 465,570 - AZOBR_RS28075 0.24 +0.8 465,623 + AZOBR_RS28075 0.29 -0.3 465,624 - AZOBR_RS28075 0.29 +1.3 465,624 - AZOBR_RS28075 0.29 -0.3 465,648 - AZOBR_RS28075 0.31 +0.3 465,806 + AZOBR_RS28075 0.45 +0.2 465,806 + AZOBR_RS28075 0.45 -0.4 465,807 - AZOBR_RS28075 0.45 +0.7 465,807 - AZOBR_RS28075 0.45 +1.1 465,932 + AZOBR_RS28075 0.56 +0.5 465,933 - AZOBR_RS28075 0.56 +1.1 465,933 - AZOBR_RS28075 0.56 +1.0 465,956 + AZOBR_RS28075 0.58 +0.1 465,957 - AZOBR_RS28075 0.58 -0.3 466,016 + AZOBR_RS28075 0.63 +0.2 466,017 - AZOBR_RS28075 0.63 +1.3 466,788 + AZOBR_RS28080 0.32 +1.4 467,440 + +0.2 467,441 - +2.1 467,444 - -2.2 467,627 + -0.4 467,688 - -1.0 467,688 - -2.1 467,688 - +0.7 467,840 + -1.9 467,877 + -0.2
Or see this region's nucleotide sequence