Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26670 and AZOBR_RS26675 are separated by 5 nucleotides AZOBR_RS26675 and AZOBR_RS26680 are separated by 85 nucleotides AZOBR_RS26680 and AZOBR_RS26685 are separated by 49 nucleotides
AZOBR_RS26670: AZOBR_RS26670 - zinc transporter ZitB, at 130,881 to 131,759
_RS26670
AZOBR_RS26675: AZOBR_RS26675 - IclR family transcriptional regulator, at 131,765 to 132,649
_RS26675
AZOBR_RS26680: AZOBR_RS26680 - ABC transporter permease, at 132,735 to 133,655
_RS26680
AZOBR_RS26685: AZOBR_RS26685 - ABC transporter permease, at 133,705 to 135,468
_RS26685
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 131.973 kb on + strand, within AZOBR_RS26675 at 131.973 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.129 kb on + strand, within AZOBR_RS26675 at 132.309 kb on + strand, within AZOBR_RS26675 at 132.310 kb on - strand, within AZOBR_RS26675 at 132.310 kb on - strand, within AZOBR_RS26675 at 132.316 kb on - strand, within AZOBR_RS26675 at 132.316 kb on - strand, within AZOBR_RS26675 at 132.349 kb on - strand, within AZOBR_RS26675 at 132.378 kb on + strand, within AZOBR_RS26675 at 132.685 kb on + strand at 132.686 kb on - strand at 132.691 kb on + strand at 132.691 kb on + strand at 132.692 kb on - strand at 132.692 kb on - strand at 132.766 kb on + strand at 132.766 kb on + strand at 132.766 kb on + strand at 132.766 kb on + strand at 132.767 kb on - strand at 132.767 kb on - strand at 132.767 kb on - strand at 132.767 kb on - strand at 132.767 kb on - strand at 133.138 kb on + strand, within AZOBR_RS26680 at 133.138 kb on + strand, within AZOBR_RS26680 at 133.138 kb on + strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.139 kb on - strand, within AZOBR_RS26680 at 133.244 kb on - strand, within AZOBR_RS26680 at 133.276 kb on + strand, within AZOBR_RS26680 at 133.321 kb on + strand, within AZOBR_RS26680 at 133.322 kb on - strand, within AZOBR_RS26680 at 133.322 kb on - strand, within AZOBR_RS26680 at 133.548 kb on + strand, within AZOBR_RS26680 at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.660 kb on + strand at 133.661 kb on - strand at 133.661 kb on - strand at 133.661 kb on - strand at 133.661 kb on - strand at 133.745 kb on + strand at 133.746 kb on - strand at 133.746 kb on - strand at 133.940 kb on - strand, within AZOBR_RS26685 at 134.021 kb on + strand, within AZOBR_RS26685 at 134.022 kb on - strand, within AZOBR_RS26685 at 134.057 kb on + strand, within AZOBR_RS26685 at 134.057 kb on + strand, within AZOBR_RS26685 at 134.057 kb on + strand, within AZOBR_RS26685 at 134.058 kb on - strand, within AZOBR_RS26685 at 134.058 kb on - strand, within AZOBR_RS26685 at 134.132 kb on + strand, within AZOBR_RS26685 at 134.132 kb on + strand, within AZOBR_RS26685 at 134.133 kb on - strand, within AZOBR_RS26685 at 134.133 kb on - strand, within AZOBR_RS26685 at 134.342 kb on + strand, within AZOBR_RS26685 at 134.342 kb on + strand, within AZOBR_RS26685 at 134.343 kb on - strand, within AZOBR_RS26685
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 131,973 + AZOBR_RS26675 0.24 +0.6 131,973 + AZOBR_RS26675 0.24 +0.4 132,129 + AZOBR_RS26675 0.41 +1.5 132,129 + AZOBR_RS26675 0.41 +0.9 132,129 + AZOBR_RS26675 0.41 -0.2 132,309 + AZOBR_RS26675 0.61 -0.8 132,310 - AZOBR_RS26675 0.62 +0.4 132,310 - AZOBR_RS26675 0.62 +0.1 132,316 - AZOBR_RS26675 0.62 +1.3 132,316 - AZOBR_RS26675 0.62 +1.2 132,349 - AZOBR_RS26675 0.66 +0.1 132,378 + AZOBR_RS26675 0.69 +0.5 132,685 + -1.1 132,686 - +0.0 132,691 + -0.2 132,691 + -0.3 132,692 - -0.1 132,692 - -1.2 132,766 + +3.1 132,766 + -0.1 132,766 + +0.1 132,766 + -1.8 132,767 - -2.4 132,767 - -1.0 132,767 - +0.5 132,767 - -0.2 132,767 - -1.6 133,138 + AZOBR_RS26680 0.44 -0.6 133,138 + AZOBR_RS26680 0.44 -1.5 133,138 + AZOBR_RS26680 0.44 -0.7 133,139 - AZOBR_RS26680 0.44 -1.5 133,139 - AZOBR_RS26680 0.44 -0.4 133,139 - AZOBR_RS26680 0.44 -0.1 133,139 - AZOBR_RS26680 0.44 +1.0 133,244 - AZOBR_RS26680 0.55 -1.2 133,276 + AZOBR_RS26680 0.59 +0.1 133,321 + AZOBR_RS26680 0.64 +1.0 133,322 - AZOBR_RS26680 0.64 -0.5 133,322 - AZOBR_RS26680 0.64 -0.0 133,548 + AZOBR_RS26680 0.88 +0.2 133,660 + +1.2 133,660 + +0.4 133,660 + -1.9 133,660 + -0.3 133,660 + +1.5 133,660 + +0.4 133,661 - -0.2 133,661 - -0.0 133,661 - -0.2 133,661 - +1.3 133,745 + +1.8 133,746 - -1.4 133,746 - +2.3 133,940 - AZOBR_RS26685 0.13 +2.5 134,021 + AZOBR_RS26685 0.18 -2.1 134,022 - AZOBR_RS26685 0.18 +0.1 134,057 + AZOBR_RS26685 0.20 +0.3 134,057 + AZOBR_RS26685 0.20 -0.6 134,057 + AZOBR_RS26685 0.20 +0.5 134,058 - AZOBR_RS26685 0.20 +1.1 134,058 - AZOBR_RS26685 0.20 +1.0 134,132 + AZOBR_RS26685 0.24 -1.3 134,132 + AZOBR_RS26685 0.24 +0.3 134,133 - AZOBR_RS26685 0.24 -0.8 134,133 - AZOBR_RS26685 0.24 -2.2 134,342 + AZOBR_RS26685 0.36 -2.1 134,342 + AZOBR_RS26685 0.36 -0.9 134,343 - AZOBR_RS26685 0.36 +0.5
Or see this region's nucleotide sequence