Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24725 and AZOBR_RS24730 are separated by 118 nucleotides AZOBR_RS24730 and AZOBR_RS24735 are separated by 197 nucleotides AZOBR_RS24735 and AZOBR_RS24740 are separated by 519 nucleotides
AZOBR_RS24725: AZOBR_RS24725 - hypothetical protein, at 599,988 to 601,172
_RS24725
AZOBR_RS24730: AZOBR_RS24730 - hypothetical protein, at 601,291 to 601,473
_RS24730
AZOBR_RS24735: AZOBR_RS24735 - hypothetical protein, at 601,671 to 605,441
_RS24735
AZOBR_RS24740: AZOBR_RS24740 - peroxiredoxin, at 605,961 to 606,386
_RS24740
Position (kb) 601
602
603
604
605
606 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 600.847 kb on - strand, within AZOBR_RS24725 at 600.847 kb on - strand at 600.847 kb on - strand, within AZOBR_RS24725 at 601.051 kb on - strand, within AZOBR_RS24725 at 601.322 kb on + strand, within AZOBR_RS24730 at 601.322 kb on + strand, within AZOBR_RS24730 at 602.212 kb on + strand, within AZOBR_RS24735 at 602.212 kb on + strand, within AZOBR_RS24735 at 602.212 kb on + strand, within AZOBR_RS24735 at 602.212 kb on + strand, within AZOBR_RS24735 at 602.213 kb on - strand, within AZOBR_RS24735 at 602.213 kb on - strand, within AZOBR_RS24735 at 602.213 kb on - strand, within AZOBR_RS24735 at 602.302 kb on + strand, within AZOBR_RS24735 at 602.302 kb on + strand, within AZOBR_RS24735 at 602.302 kb on + strand, within AZOBR_RS24735 at 602.303 kb on - strand, within AZOBR_RS24735 at 602.360 kb on - strand, within AZOBR_RS24735 at 602.395 kb on + strand, within AZOBR_RS24735 at 602.477 kb on - strand, within AZOBR_RS24735 at 602.735 kb on - strand, within AZOBR_RS24735 at 602.735 kb on - strand, within AZOBR_RS24735 at 602.851 kb on + strand, within AZOBR_RS24735 at 602.851 kb on + strand, within AZOBR_RS24735 at 602.851 kb on + strand, within AZOBR_RS24735 at 602.852 kb on - strand, within AZOBR_RS24735 at 602.893 kb on + strand, within AZOBR_RS24735 at 604.249 kb on + strand, within AZOBR_RS24735 at 604.249 kb on + strand, within AZOBR_RS24735 at 604.249 kb on + strand, within AZOBR_RS24735 at 604.249 kb on + strand, within AZOBR_RS24735 at 604.249 kb on + strand, within AZOBR_RS24735 at 604.249 kb on + strand, within AZOBR_RS24735 at 604.250 kb on - strand, within AZOBR_RS24735 at 604.390 kb on + strand, within AZOBR_RS24735 at 604.390 kb on + strand, within AZOBR_RS24735 at 604.390 kb on + strand, within AZOBR_RS24735 at 604.391 kb on - strand, within AZOBR_RS24735 at 604.391 kb on - strand, within AZOBR_RS24735 at 604.535 kb on + strand, within AZOBR_RS24735 at 604.873 kb on + strand, within AZOBR_RS24735 at 604.896 kb on + strand, within AZOBR_RS24735 at 605.155 kb on + strand at 605.156 kb on - strand at 605.156 kb on - strand at 605.167 kb on + strand at 605.188 kb on + strand at 605.189 kb on - strand at 605.189 kb on - strand at 605.279 kb on - strand at 605.347 kb on + strand at 605.347 kb on + strand at 605.537 kb on + strand at 605.537 kb on + strand at 605.558 kb on + strand at 605.559 kb on - strand at 605.608 kb on + strand at 605.616 kb on + strand at 606.292 kb on + strand, within AZOBR_RS24740 at 606.292 kb on + strand, within AZOBR_RS24740 at 606.292 kb on + strand, within AZOBR_RS24740 at 606.292 kb on + strand, within AZOBR_RS24740 at 606.293 kb on - strand, within AZOBR_RS24740 at 606.293 kb on - strand, within AZOBR_RS24740 at 606.293 kb on - strand, within AZOBR_RS24740
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 600,847 - AZOBR_RS24725 0.72 +1.3 600,847 - +2.3 600,847 - AZOBR_RS24725 0.72 +1.6 601,051 - AZOBR_RS24725 0.90 -0.3 601,322 + AZOBR_RS24730 0.17 -1.7 601,322 + AZOBR_RS24730 0.17 +0.2 602,212 + AZOBR_RS24735 0.14 -1.4 602,212 + AZOBR_RS24735 0.14 +0.9 602,212 + AZOBR_RS24735 0.14 +2.9 602,212 + AZOBR_RS24735 0.14 -1.5 602,213 - AZOBR_RS24735 0.14 -0.6 602,213 - AZOBR_RS24735 0.14 -1.6 602,213 - AZOBR_RS24735 0.14 -1.7 602,302 + AZOBR_RS24735 0.17 -1.0 602,302 + AZOBR_RS24735 0.17 +0.2 602,302 + AZOBR_RS24735 0.17 -0.6 602,303 - AZOBR_RS24735 0.17 -1.8 602,360 - AZOBR_RS24735 0.18 -2.3 602,395 + AZOBR_RS24735 0.19 -0.9 602,477 - AZOBR_RS24735 0.21 -4.1 602,735 - AZOBR_RS24735 0.28 +0.4 602,735 - AZOBR_RS24735 0.28 +0.3 602,851 + AZOBR_RS24735 0.31 +2.1 602,851 + AZOBR_RS24735 0.31 +0.4 602,851 + AZOBR_RS24735 0.31 -1.1 602,852 - AZOBR_RS24735 0.31 -0.3 602,893 + AZOBR_RS24735 0.32 +0.8 604,249 + AZOBR_RS24735 0.68 -1.4 604,249 + AZOBR_RS24735 0.68 -1.7 604,249 + AZOBR_RS24735 0.68 -0.1 604,249 + AZOBR_RS24735 0.68 -2.2 604,249 + AZOBR_RS24735 0.68 +0.3 604,249 + AZOBR_RS24735 0.68 -1.9 604,250 - AZOBR_RS24735 0.68 -0.2 604,390 + AZOBR_RS24735 0.72 -0.2 604,390 + AZOBR_RS24735 0.72 -0.2 604,390 + AZOBR_RS24735 0.72 +1.1 604,391 - AZOBR_RS24735 0.72 -0.4 604,391 - AZOBR_RS24735 0.72 +1.3 604,535 + AZOBR_RS24735 0.76 -1.0 604,873 + AZOBR_RS24735 0.85 +0.0 604,896 + AZOBR_RS24735 0.86 -0.4 605,155 + -0.5 605,156 - -2.3 605,156 - +2.3 605,167 + -1.1 605,188 + +0.6 605,189 - +1.3 605,189 - -1.7 605,279 - -0.4 605,347 + -0.3 605,347 + +1.2 605,537 + -1.6 605,537 + +0.5 605,558 + +1.6 605,559 - -0.7 605,608 + -0.8 605,616 + -0.3 606,292 + AZOBR_RS24740 0.78 -0.4 606,292 + AZOBR_RS24740 0.78 -2.3 606,292 + AZOBR_RS24740 0.78 -0.0 606,292 + AZOBR_RS24740 0.78 -0.9 606,293 - AZOBR_RS24740 0.78 +0.7 606,293 - AZOBR_RS24740 0.78 -1.1 606,293 - AZOBR_RS24740 0.78 -1.5
Or see this region's nucleotide sequence