Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24505 and AZOBR_RS24510 are separated by 22 nucleotides AZOBR_RS24510 and AZOBR_RS24515 are separated by 184 nucleotides AZOBR_RS24515 and AZOBR_RS24520 are separated by 30 nucleotides
AZOBR_RS24505: AZOBR_RS24505 - hypothetical protein, at 557,649 to 558,743
_RS24505
AZOBR_RS24510: AZOBR_RS24510 - methylenetetrahydromethanopterin dehydrogenase, at 558,766 to 559,662
_RS24510
AZOBR_RS24515: AZOBR_RS24515 - hypothetical protein, at 559,847 to 560,107
_RS24515
AZOBR_RS24520: AZOBR_RS24520 - hypothetical protein, at 560,138 to 560,740
_RS24520
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1
2 at 557.851 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.269 kb on - strand, within AZOBR_RS24505 at 558.346 kb on + strand, within AZOBR_RS24505 at 558.347 kb on - strand, within AZOBR_RS24505 at 559.235 kb on - strand, within AZOBR_RS24510 at 559.559 kb on + strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 557,851 + AZOBR_RS24505 0.18 -0.4 558,081 + AZOBR_RS24505 0.39 +0.3 558,081 + AZOBR_RS24505 0.39 -1.0 558,082 - AZOBR_RS24505 0.40 -0.6 558,082 - AZOBR_RS24505 0.40 +0.7 558,082 - AZOBR_RS24505 0.40 -2.1 558,082 - AZOBR_RS24505 0.40 -0.8 558,269 - AZOBR_RS24505 0.57 -1.2 558,346 + AZOBR_RS24505 0.64 +0.4 558,347 - AZOBR_RS24505 0.64 -0.4 559,235 - AZOBR_RS24510 0.52 +1.0 559,559 + AZOBR_RS24510 0.88 -1.4 559,560 - AZOBR_RS24510 0.89 +1.3 559,560 - AZOBR_RS24510 0.89 +1.9 559,560 - AZOBR_RS24510 0.89 +0.2 559,560 - AZOBR_RS24510 0.89 -1.1 559,560 - AZOBR_RS24510 0.89 +2.3 559,649 + +1.0 559,649 + +2.0 559,649 + +0.5 559,649 + +0.0 559,650 - +0.7 559,650 - +0.2 559,650 - -1.7 559,650 - -2.3
Or see this region's nucleotide sequence