Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23485 and AZOBR_RS23490 are separated by 89 nucleotides AZOBR_RS23490 and AZOBR_RS23495 are separated by 31 nucleotides AZOBR_RS23495 and AZOBR_RS23500 are separated by 219 nucleotides
AZOBR_RS23485: AZOBR_RS23485 - peptidase M3, at 298,139 to 300,178
_RS23485
AZOBR_RS23490: AZOBR_RS23490 - hypothetical protein, at 300,268 to 300,843
_RS23490
AZOBR_RS23495: AZOBR_RS23495 - lipoprotein putative (fragment), at 300,875 to 301,486
_RS23495
AZOBR_RS23500: AZOBR_RS23500 - transcriptional regulator IclR family, at 301,706 to 302,494
_RS23500
Position (kb) 300
301
302 Strain fitness (log2 ratio) -2
-1
0
1
2 at 299.939 kb on + strand, within AZOBR_RS23485 at 299.952 kb on - strand, within AZOBR_RS23485 at 299.954 kb on + strand, within AZOBR_RS23485 at 299.954 kb on + strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.960 kb on + strand, within AZOBR_RS23485 at 299.960 kb on + strand, within AZOBR_RS23485 at 299.960 kb on + strand, within AZOBR_RS23485 at 300.059 kb on + strand at 300.060 kb on - strand at 300.095 kb on + strand at 300.095 kb on + strand at 300.096 kb on - strand at 300.096 kb on - strand at 300.096 kb on - strand at 300.443 kb on - strand, within AZOBR_RS23490 at 300.863 kb on + strand at 300.863 kb on + strand at 300.863 kb on + strand at 300.863 kb on + strand at 300.864 kb on - strand at 300.864 kb on - strand at 300.864 kb on - strand at 301.171 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.581 kb on - strand at 302.007 kb on + strand, within AZOBR_RS23500 at 302.007 kb on + strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.133 kb on + strand, within AZOBR_RS23500 at 302.139 kb on + strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.319 kb on + strand, within AZOBR_RS23500 at 302.320 kb on - strand, within AZOBR_RS23500 at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 299,939 + AZOBR_RS23485 0.88 -0.9 299,952 - AZOBR_RS23485 0.89 -1.0 299,954 + AZOBR_RS23485 0.89 +1.2 299,954 + AZOBR_RS23485 0.89 -1.6 299,955 - AZOBR_RS23485 0.89 -1.4 299,955 - AZOBR_RS23485 0.89 -2.2 299,955 - AZOBR_RS23485 0.89 -0.1 299,955 - AZOBR_RS23485 0.89 -1.0 299,955 - AZOBR_RS23485 0.89 -0.2 299,955 - AZOBR_RS23485 0.89 -1.2 299,960 + AZOBR_RS23485 0.89 -0.8 299,960 + AZOBR_RS23485 0.89 +0.4 299,960 + AZOBR_RS23485 0.89 -0.6 300,059 + +0.3 300,060 - -1.2 300,095 + -0.5 300,095 + -1.6 300,096 - +0.1 300,096 - -0.0 300,096 - +0.4 300,443 - AZOBR_RS23490 0.30 +0.5 300,863 + -2.0 300,863 + +0.6 300,863 + -0.5 300,863 + +0.1 300,864 - -1.6 300,864 - -1.0 300,864 - +1.4 301,171 - AZOBR_RS23495 0.48 +0.2 301,300 - AZOBR_RS23495 0.69 -0.9 301,300 - AZOBR_RS23495 0.69 -1.1 301,300 - AZOBR_RS23495 0.69 -2.4 301,581 - -2.2 302,007 + AZOBR_RS23500 0.38 +0.9 302,007 + AZOBR_RS23500 0.38 +0.6 302,008 - AZOBR_RS23500 0.38 +0.9 302,008 - AZOBR_RS23500 0.38 +1.1 302,133 + AZOBR_RS23500 0.54 +2.4 302,139 + AZOBR_RS23500 0.55 +1.3 302,140 - AZOBR_RS23500 0.55 +1.0 302,140 - AZOBR_RS23500 0.55 +0.7 302,140 - AZOBR_RS23500 0.55 +0.6 302,140 - AZOBR_RS23500 0.55 +0.6 302,140 - AZOBR_RS23500 0.55 +1.0 302,212 - AZOBR_RS23500 0.64 -0.0 302,212 - AZOBR_RS23500 0.64 -0.3 302,250 + AZOBR_RS23500 0.69 +0.7 302,250 + AZOBR_RS23500 0.69 +0.7 302,251 - AZOBR_RS23500 0.69 +0.8 302,251 - AZOBR_RS23500 0.69 +0.5 302,251 - AZOBR_RS23500 0.69 -2.2 302,251 - AZOBR_RS23500 0.69 +0.5 302,251 - AZOBR_RS23500 0.69 +1.4 302,251 - AZOBR_RS23500 0.69 +0.0 302,319 + AZOBR_RS23500 0.78 +0.8 302,320 - AZOBR_RS23500 0.78 +1.0 302,469 + +1.1 302,469 + +0.7 302,469 + +1.5 302,469 + +1.0 302,469 + +0.8 302,470 - +1.1 302,470 - +0.9 302,470 - +0.9 302,470 - +0.8 302,470 - +0.9 302,470 - +1.0 302,470 - +0.7 302,470 - +1.0
Or see this region's nucleotide sequence