Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22480 and AZOBR_RS22485 are separated by 79 nucleotides AZOBR_RS22485 and AZOBR_RS22490 are separated by 357 nucleotides
AZOBR_RS22480: AZOBR_RS22480 - tricarboxylate transporter, at 54,356 to 55,882
_RS22480
AZOBR_RS22485: AZOBR_RS22485 - hypothetical protein, at 55,962 to 56,666
_RS22485
AZOBR_RS22490: AZOBR_RS22490 - conserved hypothetical protein with CBS domain, at 57,024 to 57,710
_RS22490
Position (kb) 55
56
57 Strain fitness (log2 ratio) -1
0
1
2 at 55.193 kb on + strand, within AZOBR_RS22480 at 55.193 kb on + strand, within AZOBR_RS22480 at 55.194 kb on - strand, within AZOBR_RS22480 at 55.194 kb on - strand, within AZOBR_RS22480 at 55.194 kb on - strand, within AZOBR_RS22480 at 55.194 kb on - strand, within AZOBR_RS22480 at 55.445 kb on + strand at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.445 kb on + strand, within AZOBR_RS22480 at 55.446 kb on - strand, within AZOBR_RS22480 at 55.446 kb on - strand, within AZOBR_RS22480 at 55.446 kb on - strand, within AZOBR_RS22480 at 55.446 kb on - strand, within AZOBR_RS22480 at 55.569 kb on - strand, within AZOBR_RS22480 at 55.745 kb on - strand at 55.880 kb on + strand at 55.880 kb on + strand at 55.880 kb on + strand at 55.880 kb on + strand at 55.881 kb on - strand at 55.881 kb on - strand at 55.881 kb on - strand at 56.151 kb on + strand, within AZOBR_RS22485 at 56.152 kb on - strand, within AZOBR_RS22485 at 56.169 kb on + strand, within AZOBR_RS22485 at 56.463 kb on + strand, within AZOBR_RS22485 at 56.464 kb on - strand, within AZOBR_RS22485 at 56.464 kb on - strand, within AZOBR_RS22485 at 56.464 kb on - strand, within AZOBR_RS22485 at 56.488 kb on - strand, within AZOBR_RS22485 at 56.488 kb on - strand, within AZOBR_RS22485 at 56.939 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 55,193 + AZOBR_RS22480 0.55 +2.1 55,193 + AZOBR_RS22480 0.55 +0.1 55,194 - AZOBR_RS22480 0.55 -0.3 55,194 - AZOBR_RS22480 0.55 -0.2 55,194 - AZOBR_RS22480 0.55 -0.2 55,194 - AZOBR_RS22480 0.55 +0.7 55,445 + +2.4 55,445 + AZOBR_RS22480 0.71 -0.6 55,445 + AZOBR_RS22480 0.71 -0.8 55,445 + AZOBR_RS22480 0.71 -1.2 55,445 + AZOBR_RS22480 0.71 +2.4 55,445 + AZOBR_RS22480 0.71 +0.4 55,445 + AZOBR_RS22480 0.71 -0.2 55,445 + AZOBR_RS22480 0.71 -0.6 55,445 + AZOBR_RS22480 0.71 -0.2 55,445 + AZOBR_RS22480 0.71 -0.7 55,445 + AZOBR_RS22480 0.71 -0.1 55,446 - AZOBR_RS22480 0.71 +0.4 55,446 - AZOBR_RS22480 0.71 -0.3 55,446 - AZOBR_RS22480 0.71 +0.0 55,446 - AZOBR_RS22480 0.71 -0.5 55,569 - AZOBR_RS22480 0.79 -0.4 55,745 - -0.2 55,880 + -0.0 55,880 + +0.3 55,880 + +0.4 55,880 + -0.4 55,881 - -1.1 55,881 - +2.4 55,881 - +0.0 56,151 + AZOBR_RS22485 0.27 +0.9 56,152 - AZOBR_RS22485 0.27 +0.0 56,169 + AZOBR_RS22485 0.29 -0.7 56,463 + AZOBR_RS22485 0.71 +0.1 56,464 - AZOBR_RS22485 0.71 +0.7 56,464 - AZOBR_RS22485 0.71 +0.3 56,464 - AZOBR_RS22485 0.71 -0.4 56,488 - AZOBR_RS22485 0.75 +0.3 56,488 - AZOBR_RS22485 0.75 -0.2 56,939 + +0.4
Or see this region's nucleotide sequence