Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18690

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS18690 and AZOBR_RS18695 are separated by 101 nucleotidesAZOBR_RS18695 and AZOBR_RS18700 are separated by 95 nucleotides AZOBR_RS18690: AZOBR_RS18690 - quinolinate synthetase, at 964,943 to 965,953 _RS18690 AZOBR_RS18695: AZOBR_RS18695 - exported protein of unknown function, at 966,055 to 966,417 _RS18695 AZOBR_RS18700: AZOBR_RS18700 - hypothetical protein, at 966,513 to 967,064 _RS18700 Position (kb) 964 965 966Strain fitness (log2 ratio) -2 -1 0 1 2at 964.776 kb on - strandat 964.883 kb on - strandat 965.388 kb on + strand, within AZOBR_RS18690at 965.389 kb on - strand, within AZOBR_RS18690at 965.389 kb on - strand, within AZOBR_RS18690at 965.389 kb on - strand, within AZOBR_RS18690at 965.400 kb on + strand, within AZOBR_RS18690at 965.517 kb on + strand, within AZOBR_RS18690at 965.541 kb on + strand, within AZOBR_RS18690at 965.778 kb on + strand, within AZOBR_RS18690at 965.778 kb on + strand, within AZOBR_RS18690at 965.778 kb on + strand, within AZOBR_RS18690at 965.892 kb on + strandat 965.892 kb on + strandat 965.892 kb on + strandat 965.892 kb on + strandat 965.892 kb on + strandat 965.928 kb on + strandat 965.928 kb on + strandat 965.928 kb on + strandat 965.929 kb on - strandat 965.929 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
964,776 - +0.9
964,883 - +0.8
965,388 + AZOBR_RS18690 0.44 -1.1
965,389 - AZOBR_RS18690 0.44 +2.4
965,389 - AZOBR_RS18690 0.44 +0.2
965,389 - AZOBR_RS18690 0.44 +0.3
965,400 + AZOBR_RS18690 0.45 -1.0
965,517 + AZOBR_RS18690 0.57 -0.4
965,541 + AZOBR_RS18690 0.59 -2.0
965,778 + AZOBR_RS18690 0.83 -0.3
965,778 + AZOBR_RS18690 0.83 -1.6
965,778 + AZOBR_RS18690 0.83 +1.0
965,892 + +0.2
965,892 + +0.7
965,892 + -1.6
965,892 + +0.4
965,892 + +0.8
965,928 + -1.3
965,928 + +0.2
965,928 + +1.3
965,929 - -0.4
965,929 - +0.1

Or see this region's nucleotide sequence