Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18415 and AZOBR_RS18420 are separated by 158 nucleotides AZOBR_RS18420 and AZOBR_RS18425 are separated by 89 nucleotides AZOBR_RS18425 and AZOBR_RS18430 are separated by 3 nucleotides
AZOBR_RS18415: AZOBR_RS18415 - formate dehydrogenase accessory protein FdhD, at 897,098 to 897,916
_RS18415
AZOBR_RS18420: AZOBR_RS18420 - formate dehydrogenase-N subunit gamma, at 898,075 to 898,707
_RS18420
AZOBR_RS18425: AZOBR_RS18425 - formate dehydrogenase, at 898,797 to 899,651
_RS18425
AZOBR_RS18430: AZOBR_RS18430 - formate dehydrogenase, at 899,655 to 902,084
_RS18430
Position (kb) 898
899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 897.931 kb on + strand at 897.932 kb on - strand at 898.055 kb on + strand at 898.056 kb on - strand at 898.298 kb on + strand, within AZOBR_RS18420 at 898.834 kb on + strand at 898.834 kb on + strand at 898.834 kb on + strand at 898.835 kb on - strand at 898.984 kb on + strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 898.985 kb on - strand, within AZOBR_RS18425 at 899.020 kb on + strand, within AZOBR_RS18425 at 899.021 kb on - strand, within AZOBR_RS18425 at 899.188 kb on + strand, within AZOBR_RS18425 at 899.188 kb on + strand, within AZOBR_RS18425 at 899.188 kb on + strand, within AZOBR_RS18425 at 899.189 kb on - strand, within AZOBR_RS18425 at 899.189 kb on - strand, within AZOBR_RS18425 at 899.189 kb on - strand, within AZOBR_RS18425 at 899.656 kb on + strand at 899.657 kb on - strand at 899.698 kb on + strand at 899.698 kb on + strand at 899.699 kb on - strand at 899.699 kb on - strand at 900.029 kb on - strand, within AZOBR_RS18430 at 900.044 kb on - strand, within AZOBR_RS18430 at 900.163 kb on + strand, within AZOBR_RS18430 at 900.163 kb on + strand, within AZOBR_RS18430 at 900.164 kb on - strand, within AZOBR_RS18430 at 900.164 kb on - strand, within AZOBR_RS18430 at 900.379 kb on + strand, within AZOBR_RS18430
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 897,931 + -1.5 897,932 - -0.9 898,055 + -2.3 898,056 - +0.1 898,298 + AZOBR_RS18420 0.35 -3.7 898,834 + +0.3 898,834 + -0.8 898,834 + -0.6 898,835 - -0.6 898,984 + AZOBR_RS18425 0.22 -0.6 898,985 - AZOBR_RS18425 0.22 +0.2 898,985 - AZOBR_RS18425 0.22 +0.8 898,985 - AZOBR_RS18425 0.22 -0.8 898,985 - AZOBR_RS18425 0.22 -1.1 899,020 + AZOBR_RS18425 0.26 -0.1 899,021 - AZOBR_RS18425 0.26 +0.5 899,188 + AZOBR_RS18425 0.46 -0.2 899,188 + AZOBR_RS18425 0.46 -3.2 899,188 + AZOBR_RS18425 0.46 -1.2 899,189 - AZOBR_RS18425 0.46 -1.0 899,189 - AZOBR_RS18425 0.46 -1.6 899,189 - AZOBR_RS18425 0.46 +0.3 899,656 + +1.5 899,657 - +0.6 899,698 + -0.3 899,698 + +1.0 899,699 - +2.4 899,699 - +1.6 900,029 - AZOBR_RS18430 0.15 +0.0 900,044 - AZOBR_RS18430 0.16 -0.3 900,163 + AZOBR_RS18430 0.21 -0.4 900,163 + AZOBR_RS18430 0.21 -0.6 900,164 - AZOBR_RS18430 0.21 -4.1 900,164 - AZOBR_RS18430 0.21 -0.5 900,379 + AZOBR_RS18430 0.30 -1.7
Or see this region's nucleotide sequence