Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16795 and AZOBR_RS16800 are separated by 78 nucleotides AZOBR_RS16800 and AZOBR_RS16805 overlap by 4 nucleotides
AZOBR_RS16795: AZOBR_RS16795 - hypothetical protein, at 525,607 to 527,181
_RS16795
AZOBR_RS16800: AZOBR_RS16800 - flagellar hook protein, at 527,260 to 528,666
_RS16800
AZOBR_RS16805: AZOBR_RS16805 - hypothetical protein, at 528,663 to 530,741
_RS16805
Position (kb) 527
528
529 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 526.327 kb on + strand, within AZOBR_RS16795 at 526.328 kb on - strand, within AZOBR_RS16795 at 526.328 kb on - strand, within AZOBR_RS16795 at 526.347 kb on + strand, within AZOBR_RS16795 at 526.360 kb on + strand, within AZOBR_RS16795 at 526.360 kb on + strand, within AZOBR_RS16795 at 526.361 kb on - strand, within AZOBR_RS16795 at 526.416 kb on + strand, within AZOBR_RS16795 at 526.417 kb on - strand, within AZOBR_RS16795 at 526.518 kb on + strand, within AZOBR_RS16795 at 526.519 kb on - strand, within AZOBR_RS16795 at 526.831 kb on + strand, within AZOBR_RS16795 at 526.831 kb on + strand, within AZOBR_RS16795 at 526.831 kb on + strand, within AZOBR_RS16795 at 526.832 kb on - strand, within AZOBR_RS16795 at 526.832 kb on - strand, within AZOBR_RS16795 at 526.846 kb on + strand, within AZOBR_RS16795 at 526.847 kb on - strand, within AZOBR_RS16795 at 526.876 kb on + strand, within AZOBR_RS16795 at 526.966 kb on + strand, within AZOBR_RS16795 at 526.966 kb on + strand, within AZOBR_RS16795 at 526.967 kb on - strand, within AZOBR_RS16795 at 527.110 kb on + strand at 527.111 kb on - strand at 527.111 kb on - strand at 527.232 kb on + strand at 527.510 kb on - strand, within AZOBR_RS16800 at 527.510 kb on - strand, within AZOBR_RS16800 at 527.510 kb on - strand, within AZOBR_RS16800 at 527.570 kb on - strand, within AZOBR_RS16800 at 527.635 kb on + strand, within AZOBR_RS16800 at 527.636 kb on - strand, within AZOBR_RS16800 at 527.872 kb on + strand, within AZOBR_RS16800 at 527.872 kb on + strand, within AZOBR_RS16800 at 527.872 kb on + strand, within AZOBR_RS16800 at 527.872 kb on + strand, within AZOBR_RS16800 at 527.873 kb on - strand, within AZOBR_RS16800 at 527.873 kb on - strand, within AZOBR_RS16800 at 527.873 kb on - strand, within AZOBR_RS16800 at 527.971 kb on + strand, within AZOBR_RS16800 at 527.972 kb on - strand, within AZOBR_RS16800 at 527.972 kb on - strand, within AZOBR_RS16800 at 528.221 kb on - strand, within AZOBR_RS16800 at 528.529 kb on + strand at 528.530 kb on - strand at 528.690 kb on + strand at 528.699 kb on + strand at 528.699 kb on + strand at 528.699 kb on + strand at 528.700 kb on - strand at 528.858 kb on + strand at 528.858 kb on + strand at 528.859 kb on - strand at 528.859 kb on - strand at 528.859 kb on - strand at 528.859 kb on - strand at 529.389 kb on + strand, within AZOBR_RS16805
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 526,327 + AZOBR_RS16795 0.46 +1.5 526,328 - AZOBR_RS16795 0.46 +0.6 526,328 - AZOBR_RS16795 0.46 +1.4 526,347 + AZOBR_RS16795 0.47 -0.6 526,360 + AZOBR_RS16795 0.48 +1.7 526,360 + AZOBR_RS16795 0.48 +1.0 526,361 - AZOBR_RS16795 0.48 +1.5 526,416 + AZOBR_RS16795 0.51 +2.8 526,417 - AZOBR_RS16795 0.51 -2.2 526,518 + AZOBR_RS16795 0.58 -0.5 526,519 - AZOBR_RS16795 0.58 +1.3 526,831 + AZOBR_RS16795 0.78 -0.2 526,831 + AZOBR_RS16795 0.78 -0.5 526,831 + AZOBR_RS16795 0.78 +0.0 526,832 - AZOBR_RS16795 0.78 +2.2 526,832 - AZOBR_RS16795 0.78 +0.1 526,846 + AZOBR_RS16795 0.79 +3.0 526,847 - AZOBR_RS16795 0.79 -0.3 526,876 + AZOBR_RS16795 0.81 +2.2 526,966 + AZOBR_RS16795 0.86 -1.1 526,966 + AZOBR_RS16795 0.86 +0.1 526,967 - AZOBR_RS16795 0.86 +0.9 527,110 + -0.1 527,111 - +2.1 527,111 - -2.6 527,232 + +0.3 527,510 - AZOBR_RS16800 0.18 -1.1 527,510 - AZOBR_RS16800 0.18 +0.5 527,510 - AZOBR_RS16800 0.18 +0.9 527,570 - AZOBR_RS16800 0.22 +2.1 527,635 + AZOBR_RS16800 0.27 -0.5 527,636 - AZOBR_RS16800 0.27 +2.6 527,872 + AZOBR_RS16800 0.43 +0.0 527,872 + AZOBR_RS16800 0.43 +0.7 527,872 + AZOBR_RS16800 0.43 +0.8 527,872 + AZOBR_RS16800 0.43 +1.2 527,873 - AZOBR_RS16800 0.44 +1.0 527,873 - AZOBR_RS16800 0.44 +0.5 527,873 - AZOBR_RS16800 0.44 -1.5 527,971 + AZOBR_RS16800 0.51 +1.5 527,972 - AZOBR_RS16800 0.51 +2.0 527,972 - AZOBR_RS16800 0.51 +2.3 528,221 - AZOBR_RS16800 0.68 +0.0 528,529 + +0.8 528,530 - +1.2 528,690 + +1.1 528,699 + +0.7 528,699 + +1.5 528,699 + +0.8 528,700 - +0.4 528,858 + +1.9 528,858 + +1.0 528,859 - +1.2 528,859 - +3.7 528,859 - +2.2 528,859 - +1.7 529,389 + AZOBR_RS16805 0.35 +2.4
Or see this region's nucleotide sequence