Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16500 and AZOBR_RS16505 are separated by 290 nucleotides AZOBR_RS16505 and AZOBR_RS16510 are separated by 135 nucleotides
AZOBR_RS16500: AZOBR_RS16500 - C4-dicarboxylate ABC transporter permease, at 451,349 to 453,370
_RS16500
AZOBR_RS16505: AZOBR_RS16505 - hypothetical protein, at 453,661 to 454,647
_RS16505
AZOBR_RS16510: AZOBR_RS16510 - S-formylglutathione hydrolase, at 454,783 to 455,646
_RS16510
Position (kb) 453
454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.802 kb on + strand, within AZOBR_RS16500 at 452.802 kb on + strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.880 kb on + strand, within AZOBR_RS16500 at 452.880 kb on + strand, within AZOBR_RS16500 at 453.237 kb on + strand at 453.238 kb on - strand at 453.238 kb on - strand at 453.617 kb on - strand at 453.617 kb on - strand at 453.617 kb on - strand at 453.686 kb on + strand at 453.687 kb on - strand at 453.803 kb on + strand, within AZOBR_RS16505 at 453.824 kb on + strand, within AZOBR_RS16505 at 453.824 kb on + strand, within AZOBR_RS16505 at 453.825 kb on - strand, within AZOBR_RS16505 at 453.905 kb on + strand, within AZOBR_RS16505 at 453.905 kb on + strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 454.055 kb on + strand, within AZOBR_RS16505 at 454.055 kb on + strand, within AZOBR_RS16505 at 454.056 kb on - strand, within AZOBR_RS16505 at 454.109 kb on + strand, within AZOBR_RS16505 at 454.109 kb on + strand, within AZOBR_RS16505 at 454.514 kb on + strand, within AZOBR_RS16505 at 454.514 kb on + strand, within AZOBR_RS16505 at 454.515 kb on - strand, within AZOBR_RS16505 at 454.515 kb on - strand, within AZOBR_RS16505 at 454.735 kb on + strand at 454.736 kb on - strand at 454.736 kb on - strand at 454.764 kb on + strand at 454.765 kb on - strand at 454.850 kb on + strand at 454.850 kb on + strand at 454.851 kb on - strand at 455.043 kb on - strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.258 kb on + strand, within AZOBR_RS16510 at 455.259 kb on - strand, within AZOBR_RS16510 at 455.259 kb on - strand, within AZOBR_RS16510 at 455.259 kb on - strand, within AZOBR_RS16510 at 455.483 kb on + strand, within AZOBR_RS16510 at 455.537 kb on + strand, within AZOBR_RS16510 at 455.537 kb on + strand, within AZOBR_RS16510 at 455.538 kb on - strand, within AZOBR_RS16510 at 455.538 kb on - strand, within AZOBR_RS16510
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 452,751 + AZOBR_RS16500 0.69 -1.9 452,751 + AZOBR_RS16500 0.69 -1.6 452,751 + AZOBR_RS16500 0.69 +0.6 452,752 - AZOBR_RS16500 0.69 -1.2 452,752 - AZOBR_RS16500 0.69 -2.1 452,752 - AZOBR_RS16500 0.69 +0.4 452,802 + AZOBR_RS16500 0.72 +0.3 452,802 + AZOBR_RS16500 0.72 +0.2 452,803 - AZOBR_RS16500 0.72 -0.9 452,803 - AZOBR_RS16500 0.72 -0.5 452,803 - AZOBR_RS16500 0.72 -0.9 452,803 - AZOBR_RS16500 0.72 -0.6 452,880 + AZOBR_RS16500 0.76 +0.4 452,880 + AZOBR_RS16500 0.76 +0.1 453,237 + -0.5 453,238 - +0.3 453,238 - +1.5 453,617 - -0.9 453,617 - -0.3 453,617 - -0.2 453,686 + -0.8 453,687 - -1.4 453,803 + AZOBR_RS16505 0.14 +2.3 453,824 + AZOBR_RS16505 0.17 +0.2 453,824 + AZOBR_RS16505 0.17 -1.0 453,825 - AZOBR_RS16505 0.17 -1.3 453,905 + AZOBR_RS16505 0.25 +0.3 453,905 + AZOBR_RS16505 0.25 +0.0 453,906 - AZOBR_RS16505 0.25 -0.2 453,906 - AZOBR_RS16505 0.25 +0.8 453,906 - AZOBR_RS16505 0.25 -3.0 454,055 + AZOBR_RS16505 0.40 -0.3 454,055 + AZOBR_RS16505 0.40 -0.5 454,056 - AZOBR_RS16505 0.40 -1.5 454,109 + AZOBR_RS16505 0.45 -0.8 454,109 + AZOBR_RS16505 0.45 -0.1 454,514 + AZOBR_RS16505 0.86 +1.6 454,514 + AZOBR_RS16505 0.86 -1.0 454,515 - AZOBR_RS16505 0.87 +3.0 454,515 - AZOBR_RS16505 0.87 +0.6 454,735 + -0.5 454,736 - -0.7 454,736 - +0.6 454,764 + -0.1 454,765 - +1.3 454,850 + -0.6 454,850 + -0.7 454,851 - -2.3 455,043 - AZOBR_RS16510 0.30 +0.3 455,258 + AZOBR_RS16510 0.55 +0.8 455,258 + AZOBR_RS16510 0.55 +0.3 455,258 + AZOBR_RS16510 0.55 +0.5 455,258 + AZOBR_RS16510 0.55 +0.1 455,258 + AZOBR_RS16510 0.55 +0.0 455,259 - AZOBR_RS16510 0.55 -0.3 455,259 - AZOBR_RS16510 0.55 +0.5 455,259 - AZOBR_RS16510 0.55 -0.9 455,483 + AZOBR_RS16510 0.81 +1.1 455,537 + AZOBR_RS16510 0.87 +1.2 455,537 + AZOBR_RS16510 0.87 -1.9 455,538 - AZOBR_RS16510 0.87 +0.8 455,538 - AZOBR_RS16510 0.87 -0.0
Or see this region's nucleotide sequence